New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1789630 =	54 (0.830)	4 (0.070)	4/236	NT	7.7%	intergenic (‑111/+59)	gapB/coaE	glyceraldehyde‑3‑phosphate dehydrogenase (phosphorylating)/dephospho‑CoA kinase
	?	CP000730	1789673 =	47 (0.790)					intergenic (‑154/+16)	gapB/coaE	glyceraldehyde‑3‑phosphate dehydrogenase (phosphorylating)/dephospho‑CoA kinase

TTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATCGATAACATGATCGGCCATTCGGCTTT  >  CP000730/1789552‑1789813                                                                                                                          |                                                                                                                                             tttATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTAGGTAAAGTAATGACTTATTTATAGTGTAATATTaa                                                                                                                           >  1:726172/1‑141 (MQ=255) tttATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTaa                                                                                                                           >  2:710034/1‑141 (MQ=255)  ttATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAt                                                                                                                          >  1:355393/1‑141 (MQ=255)  ttATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAt                                                                                                                          <  2:117115/141‑1 (MQ=255)   tATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtc                                                                                                                         <  1:523469/141‑1 (MQ=255)   tATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtc                                                                                                                         <  1:523463/141‑1 (MQ=255)          ttAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttct                                                                                                                  >  1:35756/1‑141 (MQ=255)          ttAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttct                                                                                                                  >  2:642119/1‑141 (MQ=255)          ttAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttct                                                                                                                  <  2:66818/141‑1 (MQ=255)           gttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTtctc                                                                                                                 >  1:70040‑M1/69‑141 (MQ=255)               ataGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTa                                                                                                             >  2:619360/1‑141 (MQ=255)                 aGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAATTTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTACTCTTCTTCTCCGTAAt                                                                                                           >  2:679659/1‑141 (MQ=255)                  gCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAtt                                                                                                          <  1:624137/141‑1 (MQ=255)                     tattatATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCgg                                                                                                       <  1:647545/141‑1 (MQ=255)                       ttatATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCt                                                                                                     <  2:486775/141‑1 (MQ=255)                           atGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTc                                                                                                 >  1:172413/1‑141 (MQ=255)                                 tttGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAAtata                                                                                           <  2:447164/141‑1 (MQ=255)                                      aaGCGTTTTCCGTTGATTTATTTCTTTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACctt                                                                                      <  1:366490/141‑1 (MQ=255)                                      aaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACctt                                                                                      >  1:389825/1‑141 (MQ=255)                                      aaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACctt                                                                                      >  1:482727/1‑141 (MQ=255)                                        gCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTGTTCAATATAACcttct                                                                                    <  1:119351/141‑1 (MQ=255)                                                 gagaagaagattaatattacactataaataagtcattactttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAAc                                                                           >  1:70040‑M2/74‑141 (MQ=255)                                                 gTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAAc                                                                           <  2:472897/141‑1 (MQ=255)                                                    gATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAt                                                                        >  2:776524/1‑141 (MQ=255)                                                    gATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAt                                                                        >  2:139941/1‑141 (MQ=255)                                                      tttatttaTCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtct                                                                      <  1:673090/141‑1 (MQ=255)                                                             atCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAgg                                                               <  1:583603/141‑1 (MQ=255)                                                              tCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTATTCTTCTAACAATCTCTCAAGgt                                                              >  2:645828/1‑141 (MQ=255)                                                               cTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCTGTAATTCGGCTTTTCAATATAACATTCTTCTTCTAACAATCTCTCAAGgtt                                                             >  2:665440/1‑141 (MQ=255)                                                               cTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgtt                                                             <  2:155838/141‑1 (MQ=255)                                                               cTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgtt                                                             <  1:516569/141‑1 (MQ=255)                                                               cTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgtt                                                             <  1:276322/141‑1 (MQ=255)                                                                   tttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgt                                                         <  1:223456/141‑1 (MQ=255)                                                                    ttATAAAAAATAGTCATTACTTACATACATCAACGCGTACTTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtt                                                        <  1:148961/141‑1 (MQ=255)                                                                    ttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtt                                                        <  2:662706/141‑1 (MQ=255)                                                                     tataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgttt                                                       <  1:96467/141‑1 (MQ=255)                                                                      ataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAATAATGCCTTATTTATAGAGTAACTTTACTCTTCTTCTCCGCAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtttt                                                      <  1:589148/141‑1 (MQ=255)                                                                         aaaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTCTTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACCCTCTCTCAAGGTTTTGTATTAAt                                                   >  1:510232/1‑141 (MQ=255)                                                                         aaaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAAt                                                   >  1:738105/1‑141 (MQ=255)                                                                         aaaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAAt                                                   >  1:25675/1‑141 (MQ=255)                                                                               AGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGt                                             >  2:180330‑M1/1‑141 (MQ=255)                                                                                  cattactttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTa                                          >  1:148997‑M2/41‑141 (MQ=255)                                                                                  CATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTa                                          >  2:756667‑M1/1‑141 (MQ=255)                                                                                        tttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCt                                    >  1:184909‑M2/35‑141 (MQ=255)                                                                                          acatacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTaa                                  <  2:355393/141‑1 (MQ=255)                                                                                            atacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtt                                                        <  2:651174/117‑1 (MQ=255)                                                                                            atacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtt                                                        >  1:651174/1‑117 (MQ=255)                                                                                             tacatCAACGCGTACGTAAAGTAATGACTTATTTCTAGTGTAATCTTAATCTTCTTCTCCGTACTTAGGCTTTTCAATATAACCTTCTTCTTCTAACAACCTCTCCAGGTTTTAATTTAATTAACGTTTATCCCCTAAAtt                               >  2:338357/1‑141 (MQ=255)                                                                                             tacatCAACGCGTACGTAAAGTAATGACTTATTTATGGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAACTTCTTATTCTAAAAATCTCTCACGGTTTTGTTTTAATTCAAGTTTATCCCCTAAAtt                               >  1:72643/1‑141 (MQ=255)                                                                                             tacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAAtt                               >  2:338451/1‑141 (MQ=255)                                                                                                cgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATc                            >  1:126761‑M2/27‑141 (MQ=255)                                                                                                atCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGCTTATCCCCTAAATTATc                            >  1:526996/1‑141 (MQ=255)                                                                                                       cgtacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATCGATAACa                     >  1:19485/1‑141 (MQ=255)                                                                                                         tacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATCGATAACATg                   >  2:558622/1‑141 (MQ=255)                                                                                                          acgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATCGATAACATGa                  >  2:287655/1‑141 (MQ=255)                                                                                                           cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATCGATAACATGAt                 >  1:8323/1‑141 (MQ=255)                                                                                                                  taatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATCGATAACATGATCGGCCAt          <  2:497059‑M2/133‑1 (MQ=255)                                                                                                                   aatgactTATTTATAGTGTAATATTAATCTTCTTCTCCCTAATTCGACTTTACAATATAACCTTCTTCTTCTAACAATATATAAAGGTTGTGTTTTAATTCAAGTTTATACCCTAAATTATTGATAACATGATAGGCTAtt         <  2:242264‑M2/134‑1 (MQ=255)                                                                                                                       actTATTTATAGTGTAATATTAATCTTCTTCTCCGt                                                                                                              >  1:38490‑M2/4‑36 (MQ=255)                                                                                                                       actTATTTATAGTGTAATATTAATCTTCTTCTCCGt                                                                                                              <  2:38490‑M2/33‑1 (MQ=255)                                                                                                                       actTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATCGATAACATGATCGGCCATTCGGc     <  2:420811‑M2/138‑1 (MQ=255)                                                                                                                       actTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATCGATAACATGATCGGCCATTCGGc     >  2:398615‑M2/4‑141 (MQ=255)                                                                                                                        ctTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATCGATAACATGATCGGCCATTCGGCt    <  1:243057‑M2/139‑1 (MQ=255)                                                                                                                          tatttatAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATCGATAACATGATCGGCCATTCGGCttt  <  2:506725/141‑1 (MQ=255)                                                                                                                          |                                                                                                                                             TTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAATTCAAGTTTATCCCCTAAATTATCGATAACATGATCGGCCATTCGGCTTT  >  CP000730/1789552‑1789813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.