New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2830200	65 (1.000)	4 (0.070)	4/236	NT	5.9%	intergenic (+28/+163)	icaC/USA300HOU_2670	intercellular adhesion protein C/hypothetical protein
	?	CP000730	= 2830235	67 (1.120)					intergenic (+63/+128)	icaC/USA300HOU_2670	intercellular adhesion protein C/hypothetical protein

ATGATATTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTG  >  CP000730/2830095‑2830375                                                                                                                                              |                                                                                                                                             aTGATATTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGtttt                                                                                                                                              >  1:637854/1‑141 (MQ=255)  tGATATTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTa                                                                                                                                             <  1:785862‑M2/141‑2 (MQ=255)     tatTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTaccg                                                                                                                                          <  1:93832‑M2/141‑5 (MQ=255)        tGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTaccgcgt                                                                                                                                       <  1:105195‑M2/141‑8 (MQ=255)          cGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTaccgcgtgt                                                                                                                                     >  2:772689‑M2/1‑132 (MQ=255)           gTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTaccgcgtgtt                                                                                                                                    >  1:123781‑M2/1‑131 (MQ=255)           gTGAATTCTATATCTTTAGGTTTATTATTGGAAAAAAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTAGGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTaccgcgtgtt                                                                                                                                    >  1:231142‑M2/1‑131 (MQ=255)            tGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTaccgcgtgttt                                                                                                                                   >  2:295542‑M2/1‑130 (MQ=255)               aTTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAat                                                                                                                                <  1:322478/141‑1 (MQ=255)                    atatCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGt                                                                                                                           >  1:432113/1‑141 (MQ=255)                       tCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTtat                                                                                                                        >  2:621440/1‑141 (MQ=255)                         tttAGGTTTATTATTGGAAAACAACCATATATATTGAACATGAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTGTTACCGCGTGTTTAATATTGTTATAc                                                                                                                      >  2:430026/1‑141 (MQ=255)                         tttAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATAc                                                                                                                      <  2:255135/141‑1 (MQ=255)                          ttAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGAGAGTGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACa                                                                                                                     >  1:410556/1‑141 (MQ=255)                            aGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACata                                                                                                                   >  2:735603/1‑141 (MQ=255)                             ggTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGCGGGCGAAATCAGTTTGAATTGACTGACTTCGTCTTCCCGCGTCTTTCATATTGTTATACatac                                                                                                                  >  2:718059/1‑140 (MQ=255)                                ttattaTTGGAAAACAACTATATAAATTGAATATTAATGCTTATTAATTATTAAGATATGTT‑AAAAACACGCTGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATAtttt                                                                                                               <  2:659637/141‑1 (MQ=255)                                ttattaTTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATAtt                                                                                                               <  2:659576/141‑1 (MQ=255)                                ttattaTTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATAtt                                                                                                               <  1:452439/141‑1 (MQ=255)                                 tattatTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTc                                                                                                              <  1:439575/141‑1 (MQ=255)                                  attattGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCt                                                                                                             >  1:456769/1‑141 (MQ=255)                                  attattGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCt                                                                                                             >  2:146325/1‑141 (MQ=255)                                     attGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAAt                                                                                                          <  2:446291/141‑1 (MQ=255)                                       tGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTg                                                                                                        >  1:611240/1‑141 (MQ=255)                                       tGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTg                                                                                                        >  1:136856/1‑141 (MQ=255)                                             acaacCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACAtt                                                                                                  >  1:761845/1‑141 (MQ=255)                                                acCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTaa                                                                                               >  2:440572/1‑141 (MQ=255)                                                  cATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAAc                                                                                             <  2:447791/141‑1 (MQ=255)                                                  cATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAAc                                                                                             >  1:348036/1‑141 (MQ=255)                                                  cATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAAc                                                                                             <  2:381461/141‑1 (MQ=255)                                                  cATATAAATTGAACATTAATGCTTATTAATTATTAAGCTAAGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAAc                                                                                             >  2:677199/1‑141 (MQ=255)                                                     ataAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTc                                                                                          >  1:350884/1‑141 (MQ=255)                                                       aaaTTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTaccgcgtgtttttaacatagcttaataattaataagcattaatgttcaatttat                                                                                        <  2:214978‑M2/141‑55 (MQ=255)                                                        aaTTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTa                                                                                       >  1:502854/1‑141 (MQ=255)                                                        aaTTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTa                                                                                       <  2:191616/141‑1 (MQ=255)                                                        aaTTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTa                                                                                       >  2:560707/1‑141 (MQ=255)                                                            gAACATTAATGGTGACTAATGATTGAGCTATGTT‑AAAAACACGCGGTGCGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCTCGTGCTTAATAGTGTTGTACATATATTCTAATTGCACATTTAAACTTCGTAAATg                                                                                   <  2:72380/141‑1 (MQ=255)                                                                   aataagcattaattattaaGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATgt                                                                            >  2:322347/8‑140 (MQ=255)                                                                         tattaattattaaGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTCATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTgg                                                                      <  1:119249/141‑1 (MQ=255)                                                                         tattaattattaaGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTAACGAGTGTTTAATATTGCTATACATATATTCTAATTGCAAATTTAAAATTCGTAAATGCCAATGGGAGTgg                                                                      >  1:662692/1‑141 (MQ=255)                                                                           ttaattattaaGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGa                                                                    <  2:138057/141‑1 (MQ=255)                                                                             aattattaaGCTATGTTAAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGAc                                                                   <  2:529991/141‑1 (MQ=255)                                                                                  ttaaGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAAt                                                             <  1:374952/141‑1 (MQ=255)                                                                                  ttaaGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAAt                                                             <  2:616672/141‑1 (MQ=255)                                                                                  ttaaGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAAt                                                             <  1:237527/141‑1 (MQ=255)                                                                                   taaGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATg                                                            >  2:522696/1‑141 (MQ=255)                                                                                     aGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGATTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGat                                                          >  1:31710/1‑141 (MQ=255)                                                                                         aTGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatatat                                                                                                                <  1:157623/83‑1 (MQ=255)                                                                                         aTGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatatat                                                                                                                >  2:157623/1‑83 (MQ=255)                                                                                           gTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTc                                                    >  1:215291/1‑141 (MQ=255)                                                                                             t‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGc                                                  <  2:505849/141‑1 (MQ=255)                                                                                             t‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGc                                                  <  2:580572/141‑1 (MQ=255)                                                                                                 aaaCACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCaaa                                               <  2:159929/141‑1 (MQ=255)                                                                                                 aaaCACGCGGTGGGCGAAAGCAGTTTGAATTGACTGGCTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCaaa                                               <  1:676200/141‑1 (MQ=255)                                                                                                  aaCACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCaaaa                                              <  2:785862/141‑1 (MQ=255)                                                                                                   acacGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAat                                             <  1:601305/141‑1 (MQ=255)                                                                                                    cacGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGTTATTTTCGCAAAatt                                            <  2:71312/141‑1 (MQ=255)                                                                                                    cacGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatt                                            <  1:187608/141‑1 (MQ=255)                                                                                                        cgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttatt                                        <  1:600743/141‑1 (MQ=255)                                                                                                        cgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttatt                                        >  1:205215/1‑141 (MQ=255)                                                                                                         ggTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTaccgcgtgtttttaacatagcttaataattaataagcattaatgttcaatttatatggttgttttccaataataaacctaaagatatagaattcacgcaatat                                       <  2:204127‑M2/141‑104 (MQ=255)                                                                                                         ggTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttattt                                       >  2:732398/1‑141 (MQ=255)                                                                                                         ggTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttattt                                       >  2:726825/1‑141 (MQ=255)                                                                                                          gTGGGCGAAATCAGTTTGACTTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtc                                      <  1:131131/141‑1 (MQ=255)                                                                                                          gTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTaccgcgtgtttttaacatagcttaataattaataagcattaatgttcaatttatatggttgttttccaataataaacctaaagatatagaattcacgcaatatc                                      <  1:713995‑M2/141‑105 (MQ=255)                                                                                                           tGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTaccgcgtgtttttaacatagcttaataattaataagcattaatgttcaatttatatggttgttttccaataataaacctaaagatatagaattcacgcaatatca                                     <  1:431559‑M2/141‑106 (MQ=255)                                                                                                           tGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTTCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                     >  2:350371/1‑141 (MQ=255)                                                                                                            gggCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcgt                                    >  1:254553/1‑141 (MQ=255)                                                                                                             ggCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcgtc                                   <  1:302588/141‑1 (MQ=255)                                                                                                                gAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCgtcgtc                                <  2:379068/141‑1 (MQ=255)                                                                                                                    tCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAc                            >  2:247118/1‑141 (MQ=255)                                                                                                                     cAGTTTCAATTGAGTGACTGCGTTTTACCGCGTGTTTAATATTGTTATACAGATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGTGTTGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCTcc                           <  2:441317/141‑1 (MQ=38)                                                                                                                      aGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAccc                          <  1:98840/141‑1 (MQ=255)                                                                                                                        tttGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCa                        <  2:13018/141‑1 (MQ=255)                                                                                                                        tttGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCa                        <  2:3203/141‑1 (MQ=255)                                                                                                                           gAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACt                     <  1:144899/141‑1 (MQ=255)                                                                                                                           gAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACt                     >  1:398996/1‑141 (MQ=255)                                                                                                                                  ctgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACat              <  1:65024/141‑1 (MQ=255)                                                                                                                                      ctTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACattatt          <  2:443417/141‑1 (MQ=255)                                                                                                                                        tCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGt        <  1:643766/141‑1 (MQ=255)                                                                                                                                          gTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTaa      >  1:239226/1‑141 (MQ=255)                                                                                                                                           ttttACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAAc     <  2:720671/141‑1 (MQ=255)                                                                                                                                           ttttACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAAc     <  1:748363/141‑1 (MQ=255)                                                                                                                                              tACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTg  <  2:410556/141‑1 (MQ=255)                                                                                                                                              tACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTg  >  2:366159/1‑141 (MQ=255)                                                                                                                                              tACCGCGTGCTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTg  >  1:691887/1‑141 (MQ=255)                                                                                                                                              |                                                                                                                                             ATGATATTGCGTGAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTT‑AAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTG  >  CP000730/2830095‑2830375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.