New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1373642	32 (1.160)	4 (0.160)	4/236	NT	11.7%	intergenic (+663/‑1232)	yneF/sbcC	hypothetical protein/exodeoxyribonuclease SbcC
	?	CP000730	= 1373669	31 (1.230)					intergenic (+690/‑1205)	yneF/sbcC	hypothetical protein/exodeoxyribonuclease SbcC

TGAAATAGATCCTGGAGAATTAGGCGGCATGTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTA  >  CP000730/1373505‑1373781                                                                                                                                          |                                                                                                                                            tGAAATAGATCCTGGAGAATTAGGCGGCATGTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTtgt                                                                                                                                          <  1:323635/141‑1 (MQ=255)     aTAGATCCTGGAGAATTAGGCGGCATGTTCTTTTTATTAGCATTTTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATc                                                                                                                                      <  1:254035/141‑1 (MQ=255)         aTCCTGGAGAATTAGGCGGCATGTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACt                                                                                                                                  <  1:241430/141‑1 (MQ=255)          tCCTGGAGAATTAGGCGGCATGTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACtt                                                                                                                                 >  1:334872/1‑141 (MQ=255)              ggAGAATTAGGCGGCATGTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTaa                                                                                                                             >  2:109345/1‑141 (MQ=255)              ggAGAATTAGGCGGCATGTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTaa                                                                                                                             >  2:109351/1‑141 (MQ=255)                 gaATTAGGCGGCATGTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATc                                                                                                                          <  1:80393/141‑1 (MQ=255)                             aTGTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTcattgactgatttagaagtcgatcacaagtg                                                                                                              <  1:187583‑M1/141‑32 (MQ=255)                               gTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTcattgactgatttagaagtcgatcacaagtggt                                                                                                            <  2:320123‑M1/141‑34 (MQ=255)                                  cTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTcattgactgatttagaagtcgatcacaagtggtttt                                                                                                         <  2:334343‑M1/141‑37 (MQ=255)                                      ttattaGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTcattgactgatttagaagtcgatcacaagtggttttaaaa                                                                                                     <  1:37934‑M1/141‑41 (MQ=255)                                         taaGCATTCTGTATGATTGTCCCTTGGAGAGCAGCCATGCTATACAAATACAACAAACTAAAGAAAACACTAATAAATTAATGACTATTAAAACCACTTGTGATCGACATATAAATCAGTCAATGAGTGGTTTTAAttttt                                                                                                  >  2:131045/3‑140 (MQ=255)                                           aGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACt                                                                                                <  1:169692/141‑1 (MQ=255)                                            gCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACtt                                                                                               >  1:142238/1‑141 (MQ=255)                                             cATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTg                                                                                              <  2:329046/141‑1 (MQ=255)                                             cATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTg                                                                                              <  2:329084/141‑1 (MQ=255)                                                     aTGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTg                                                                                      >  2:234678/1‑141 (MQ=255)                                                     aTGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTg                                                                                      >  2:52882/1‑141 (MQ=255)                                                     aTGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTg                                                                                      >  2:52881/1‑141 (MQ=255)                                                     aTGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCAATTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTg                                                                                      >  2:5291/1‑141 (MQ=255)                                                        aTTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTCCTTGAACAGGTGaaa                                                                                   >  2:230937/1‑141 (MQ=255)                                                            ttCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGAt                                                                               <  2:51701/141‑1 (MQ=255)                                                                  ggAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCCATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATAtt                                                                         <  1:74441/141‑1 (MQ=255)                                                                          gcaATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATtaaaataaa                                                                 <  1:302753/141‑1 (MQ=255)                                                                               gCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGa                                                            <  2:215421/141‑1 (MQ=255)                                                                                      aaaTACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATg                                                     >  1:50666/1‑141 (MQ=255)                                                                                        aTACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGtt                                                   <  1:244945/141‑1 (MQ=255)                                                                                              aaaaCTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTatat                                             <  1:31663/141‑1 (MQ=255)                                                                                               aaaCTAAAGAAAACATGAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATg                                            >  2:67211/1‑141 (MQ=255)                                                                                                     aaGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCa                                      <  2:200223/141‑1 (MQ=255)                                                                                                      aGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTACTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGAGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAg                                     >  2:289650/1‑141 (MQ=255)                                                                                                        aaaaCATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTa                                   >  1:297606/1‑141 (MQ=255)                                                                                                            cATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAAAGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGa                               <  1:256400/141‑1 (MQ=255)                                                                                                               tAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGaaaa                            <  2:1125/141‑1 (MQ=255)                                                                                                                      ttaattaCTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATg                                <  1:243969/130‑1 (MQ=255)                                                                                                                      ttaattaCTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATg                                >  2:243969/1‑130 (MQ=255)                                                                                                                              ttttAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGagtggttttaaaagtaattaattgattaatgttttctttagttttttgtatttatatagcattgctgctctccaaggaacaatcatacagaatgctaataa             <  1:37934‑M2/141‑102 (MQ=255)                                                                                                                                 tAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACt          <  1:293117/141‑1 (MQ=255)                                                                                                                                  aaaaCCACTTGTGATCGACTTCTAAATCAGTCAATGagtggttttaaaagtaattaattgattaatgttttctttagttttttgtatttatatagcattgctgctctccaaggaacaatcatacagaatgctaataaaaag         <  2:334343‑M2/141‑106 (MQ=255)                                                                                                                                     aCCACTTGTGATCGACTTCTAAATCAGTCAATGagtggttttaaaagtaattaattgattaatgttttctttagttttttgtatttatatagcattgctgctctccaaggaacaatcatacagaatgctaataaaaagaac      <  2:320123‑M2/141‑109 (MQ=255)                                                                                                                                       cACTTGTGATCGACTTCTAAATCAGTCAATGagtggttttaaaagtaattaattgattaatgttttctttagttttttgtatttatatagcattgctgctctccaaggaacaatcatacagaatgctaataaaaagaacat    <  1:187583‑M2/141‑111 (MQ=255)                                                                                                                                        aCTTGTGATCGACTTCAAAGTCAGTCAATGATTGAATTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATTTTCTATATGAAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACtt   >  2:50721/1‑141 (MQ=255)                                                                                                                                         cTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTa  >  1:47554/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                            TGAAATAGATCCTGGAGAATTAGGCGGCATGTTCTTTTTATTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTA  >  CP000730/1373505‑1373781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.