New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1373642	32 (1.160)	4 (0.160)	4/236	NT	11.7%	intergenic (+663/‑1232)	yneF/sbcC	hypothetical protein/exodeoxyribonuclease SbcC
	?	CP000730	= 1373669	31 (1.230)					intergenic (+690/‑1205)	yneF/sbcC	hypothetical protein/exodeoxyribonuclease SbcC

TTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAA  >  CP000730/1373545‑1373801                                                                                                                             |                                                                                                                                     taaGCATTCTGTATGATTGTCCCTTGGAGAGCAGCCATGCTATACAAATACAACAAACTAAAGAAAACACTAATAAATTAATGACTATTAAAACCACTTGTGATCGACATATAAATCAGTCAATGAGTGGTTTTAAttttt                                                                                                                      >  2:131045/3‑140 (MQ=255)   aGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACt                                                                                                                    <  1:169692/141‑1 (MQ=255)    gCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACtt                                                                                                                   >  1:142238/1‑141 (MQ=255)     cATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTg                                                                                                                  <  2:329084/141‑1 (MQ=255)     cATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTg                                                                                                                  <  2:329046/141‑1 (MQ=255)             aTGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTg                                                                                                          >  2:52881/1‑141 (MQ=255)             aTGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTg                                                                                                          >  2:52882/1‑141 (MQ=255)             aTGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTg                                                                                                          >  2:234678/1‑141 (MQ=255)             aTGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCAATTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTg                                                                                                          >  2:5291/1‑141 (MQ=255)                aTTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTCCTTGAACAGGTGaaa                                                                                                       >  2:230937/1‑141 (MQ=255)                    ttCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGAt                                                                                                   <  2:51701/141‑1 (MQ=255)                          ggAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCCATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATAtt                                                                                             <  1:74441/141‑1 (MQ=255)                                  gcaATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATtaaaataaa                                                                                     <  1:302753/141‑1 (MQ=255)                                       gCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGa                                                                                <  2:215421/141‑1 (MQ=255)                                              aaaTACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATg                                                                         >  1:50666/1‑141 (MQ=255)                                                aTACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGtt                                                                       <  1:244945/141‑1 (MQ=255)                                                      aaaaCTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTatat                                                                 <  1:31663/141‑1 (MQ=255)                                                       aaaCTAAAGAAAACATGAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATg                                                                >  2:67211/1‑141 (MQ=255)                                                             aaGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCa                                                          <  2:200223/141‑1 (MQ=255)                                                              aGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTACTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGAGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAg                                                         >  2:289650/1‑141 (MQ=255)                                                                aaaaCATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTa                                                       >  1:297606/1‑141 (MQ=255)                                                                    cATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAAAGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGa                                                   <  1:256400/141‑1 (MQ=255)                                                                       tAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGaaaa                                                <  2:1125/141‑1 (MQ=255)                                                                              ttaattaCTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATg                                                    >  2:243969/1‑130 (MQ=255)                                                                              ttaattaCTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATg                                                    <  1:243969/130‑1 (MQ=255)                                                                                      ttttAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGagtggttttaaaagtaattaattgattaatgttttctttagttttttgtatttatatagcattgctgctctccaaggaacaatcatacagaatgctaataa                                 <  1:37934‑M2/141‑102 (MQ=255)                                                                                         tAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACt                              <  1:293117/141‑1 (MQ=255)                                                                                          aaaaCCACTTGTGATCGACTTCTAAATCAGTCAATGagtggttttaaaagtaattaattgattaatgttttctttagttttttgtatttatatagcattgctgctctccaaggaacaatcatacagaatgctaataaaaag                             <  2:334343‑M2/141‑106 (MQ=255)                                                                                             aCCACTTGTGATCGACTTCTAAATCAGTCAATGagtggttttaaaagtaattaattgattaatgttttctttagttttttgtatttatatagcattgctgctctccaaggaacaatcatacagaatgctaataaaaagaac                          <  2:320123‑M2/141‑109 (MQ=255)                                                                                               cACTTGTGATCGACTTCTAAATCAGTCAATGagtggttttaaaagtaattaattgattaatgttttctttagttttttgtatttatatagcattgctgctctccaaggaacaatcatacagaatgctaataaaaagaacat                        <  1:187583‑M2/141‑111 (MQ=255)                                                                                                aCTTGTGATCGACTTCAAAGTCAGTCAATGATTGAATTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATTTTCTATATGAAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACtt                       >  2:50721/1‑141 (MQ=255)                                                                                                 cTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTa                      >  1:47554/1‑141 (MQ=255)                                                                                                    gtgATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAggg                   <  1:63947/141‑1 (MQ=255)                                                                                                          gACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAata             <  2:215538/141‑1 (MQ=255)                                                                                                             tgtaaaaTCAGTTAATGGGTTTTTTTGATTTAACTTGAAAAGGTGAAATGATTATTGTAAAATAATAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATATTTACAGCAGACTGGCACTTAGGGAAAATATTa          <  2:214977/137‑1 (MQ=255)                                                                                                                     cAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATGTGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCaa  <  1:308828/141‑1 (MQ=255)                                                                                                                             |                                                                                                                                     TTAGCATTCTGTATGATTGTTCCTTGGAGAGCAGCAATGCTATATAAATACAAAAAACTAAAGAAAACATTAATCAATTAATTACTTTTAAAACCACTTGTGATCGACTTCTAAATCAGTCAATGAGTGGTTTTAATTTTACTTGAAAAGGTGAAATGATTATATTAAAATAAAAGCGAACAAATGTTCTATATGGAGGCAGTAATGAAAATTATACATACAGCAGACTGGCACTTAGGGAAAATATTAAATGGCAA  >  CP000730/1373545‑1373801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.