| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2640193 | 142 (1.240) | 3 (0.030) | 3/250 | 9.5 | 2.4% | intergenic (‑45/+109) | gntR/USA300HOU_2495 | gluconate operon transcriptional repressor/MerR family transcriptional regulator |
| ? | CP000730 | = 2640171 | 124 (1.280) | intergenic (‑23/+131) | gntR/USA300HOU_2495 | gluconate operon transcriptional repressor/MerR family transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATTTTCAGTGAGTAACGTACCTTCAGCTATGTGACCATTCACAATGCCTAAGCGTAATTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGACATACTTGTATACAAGTATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2640025‑2640193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatacttgtatacaagtatgtCGTGTAATGAAGGAGTGACTTTGATGATGTATGGATATCCAGAGAAATGGTTGGAAGGTATGACAACTGGAGAAGGTATCGCGGCAGAATTACGCTTAGGCATTGTGAATGGTCACATAGCTGAAGGTACGTTACTCACTG < CP000730/2640171‑2640031 GATTTTCAGTGAGTAACGTACCTTCAGCTATGTGACCATTCACAATGCCTAAGCGTAATTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGA < 1:208225/148‑1 TCAGTTAGTAACGTACCTTCAGCTATGTGACCATTCACACTGCCTAAGCGTAACTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCATCCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGACATAC < 2:162182/148‑1 GAGTAACGTACCTTCAGCTATGTGACCATTCACAATGCCTAAGCGTAATTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGACATCCTTGTt > 2:1250096/1‑147 GAGTAACGTACCTTCAGCTATGTGACCATTCACAATGCCTAAGCGTAATTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCCCTGGATCTCCATACATCATCAAAGTCACTCCTTCATTACACGACATACTTGTA > 2:410078/1‑148 AACGTACCTTCAGCTATGTGACCATTCACAATGCCTAAGCGTAATTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGACATACTTGTATACA < 2:352084/148‑1 GTACCTTCAGCTATGTGACCATTCACAATGCCTAAGCGTACTTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGACATACGTGTATACAAGT > 1:357723/1‑148 GTACCTTCAGCTATGTGACCATTCACAATGCCTAAGCGTAATTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGACATACTTGTATACAAGT > 2:514727/1‑148 GTACCTTCAGCTATGTGACCATTCACAATGCCTAAGCGTAATTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACCCCTTCCTTACACGACATACTTGTATAAAAGT > 1:879510/1‑148 TACCTTCAGCTATGTGACCATTCACAATGCCTAAGCGTAATTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTGCATTAAACGACATACTTGTATACAAGTA > 1:865737/1‑148 CCTTCAGCTATGTGACCATTCACAATGCCTAAGCGTAATTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGACATACTTGTATACAAGTATG < 1:141940/148‑1 GACCATTCACAATGCCTAAGCGTAATTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGACATACTTGTATACAAGTATGTCGTGTAATGAAG < 1:1226224/148‑1 CCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGACATACTTGTATACAAGTATGTCGTGTAATGAAGGAGTGACTTTGATGATGTATGGATATCCAG > 1:761698/1‑148 TTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGACATACTTGTATACAAGTATGTCGTGTAATGAAGGAGTGACTTTGATGATGTATGGATATCCAGAGAAATGGTTGGAAGGTATGACAACTGGAGAAGGTATC > 2:761698/1‑148 ATACTTGTATACAAGTATGTCGTGTAATGAAGGAGTGACTTTGATGATGTATGGATATCCAGAGAAATGGTTGGAAGGTATGACAACTGGAGAAGGTATCGCGGCAGAATTACGCTTAGGCATTGTGAATGGTCACATAGCTGAAGGT > 1:817813/1‑148 TACTTGTATACAAGTATGTCGTGTAATGAAGGAGTGACTTTGATGATGTATGGATATCCAGAGAAATGGTTGGAAGGTATGACAACTGGAGAAGGTATCGCGGCAGAATTACGCTTAGGCATTGTGAATGGTCACATCGCTGAAGGTA > 2:1058716/1‑148 ATACAAGTATGTCGTGTAATGAAGGAGTGACTTTGATGATGTATGGATATCCAGAGAAATGGTTGGAAGGTATGACAACTGGAGAAGGTATCGCGGCAGAATTACGCTTAGGCATTGTGAATGGTCACATAGCTGAAGGTACGTTACT > 2:288800/1‑148 aACAAGTATGTCGGGTAATGAAGGAGTGACTTTGATGATGTATGGATATCCAGAGAAATGGTTGGAAGGTATGACAACTGGAGAAGGTATCGCGGCAGAATTACGCTTAGGCATTGTGAATGGTCACATAGCTGAAGGTACGTTACTC < 2:471250/147‑1 aaaataacTCGTGTAATGAAGGAGTGACTTTGATGATGAATGGATATCCAGAGAAATGGTTGGAAGGTATGACAACTGGAGAAGGTATCGCGGCAGAATTACGCTTAGGCATTGTGAATGGTCACATAGCTGAAGGTACGTTACTCAC < 2:73656/140‑1 CAAGTATGTCGTGTAATGAAGGAGTGACTTTGATGATGTATGGATATCCAGAGAAATGGTTGGAAGGTATGACAACTGGAGAAGGTATCGCGGCAGAATTACGCTTAGGCATTGTGAATGGTCACATAGCTGAAGGTACGTTACTCAC > 2:319391/1‑148 AGTATGTCGTGTAATGAAGGAGTGACTTTGATGATGTATGGATATCCAGAGAAATGGTTGGAAGGTATGACAACTGGAGAAGGTATCGCGGCAGAATTACGCTTAGGCATTGTGAATGGTCACATAGCTGAAGGTACGTTACTCACTt > 2:29307/1‑147 GATTTTCAGTGAGTAACGTACCTTCAGCTATGTGACCATTCACAATGCCTAAGCGTAATTCTGCCGCGATACCTTCTCCAGTTGTCATACCTTCCAACCATTTCTCTGGATATCCATACATCATCAAAGTCACTCCTTCATTACACGACATACTTGTATACAAGTATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2640025‑2640193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatacttgtatacaagtatgtCGTGTAATGAAGGAGTGACTTTGATGATGTATGGATATCCAGAGAAATGGTTGGAAGGTATGACAACTGGAGAAGGTATCGCGGCAGAATTACGCTTAGGCATTGTGAATGGTCACATAGCTGAAGGTACGTTACTCACTG < CP000730/2640171‑2640031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |