mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,190 | 0 | A | G | 32.3% | 14.4 / 18.1 | 32 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 30.8% | 46.0 / 18.0 | 41 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 25.0% | 16.0 / 16.6 | 32 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 61 (0.810) | 11 (0.160) | 10/540 | 6.0 | 18.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 39 (0.550) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 105 (1.400) | 8 (0.110) | 8/554 | 7.0 | 8.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 80 (1.100) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1433172 = | 60 (0.800) | 4 (0.060) | 4/554 | 9.1 | 6.0% | coding (503/591 nt) | pinR | Rac prophage; putative site‑specific recombinase |
| ? | NC_000913 | = 1634197 | 68 (0.940) | coding (576/591 nt) | pinQ | Qin prophage; putative site‑specific recombinase | |||||
| * | ? | NC_000913 | 1433090 = | 50 (0.670) | 4 (0.060) | 4/554 | 9.1 | 6.9% | coding (585/591 nt) | pinR | Rac prophage; putative site‑specific recombinase |
| ? | NC_000913 | 1433181 = | 60 (0.830) | coding (494/591 nt) | pinR | Rac prophage; putative site‑specific recombinase | |||||
| * | ? | NC_000913 | 732824 = | 77 (1.030) | 5 (0.070) | 4/554 | 9.1 | 6.6% | coding (3242/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 734645 = | 67 (0.920) | pseudogene (513/1521 nt) | rhsO | pseudogene, Rhs family | |||||
| * | ? | NC_000913 | 4498181 = | NA (NA) | 5 (0.070) | 4/572 | 9.3 | NA | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4499512 | NA (NA) | intergenic (+12/+81) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
| * | ? | NC_000913 | 381258 = | NA (NA) | 4 (0.050) | 4/570 | 9.3 | NA | pseudogene (3/417 nt) | yaiX | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase |
| ? | NC_000913 | = 382589 | NA (NA) | noncoding (1330/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 127761 | 77 (1.030) | 3 (0.040) | 3/558 | 9.8 | 3.8% | intergenic (+174/‑151) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
| ? | NC_000913 | = 127874 | 76 (1.040) | intergenic (+287/‑38) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase | |||||