mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 38.9% | 38.0 / 41.6 | 58 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 24.1% | 68.8 / 28.7 | 61 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 22.2% | 49.2 / 17.0 | 54 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,875,521 | 0 | T | C | 22.0% | 163.9 / 22.4 | 92 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 106 (0.860) | 32 (0.360) | 8/416 | 10.5 | 29.4% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 77 (0.870) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4542682 = | 185 (1.510) | 11 (0.090) | 11/558 | 11.9 | 6.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 151 (1.270) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 185 (1.510) | 10 (0.080) | 9/558 | 12.9 | 5.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 149 (1.250) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4333297 = | 117 (0.950) | 6 (0.050) | 6/564 | 14.9 | 5.2% | coding (654/669 nt) | basR | response regulator in two‑component regulatory system with BasS |
| ? | NC_000913 | 4333360 = | 104 (0.870) | coding (591/669 nt) | basR | response regulator in two‑component regulatory system with BasS | |||||
| * | ? | NC_000913 | = 190639 | 109 (0.890) | 7 (0.060) | 6/566 | 15.0 | 6.4% | intergenic (+40/‑218) | rpsB/tsf | 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts |
| ? | NC_000913 | = 190712 | 98 (0.810) | intergenic (+113/‑145) | rpsB/tsf | 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts | |||||
| * | ? | NC_000913 | = 3666601 | 36 (0.290) | 5 (0.040) | 5/566 | 15.7 | 11.3% | coding (980/1401 nt) | gadA | glutamate decarboxylase A, PLP‑dependent |
| ? | NC_000913 | = 3666644 | 43 (0.360) | coding (937/1401 nt) | gadA | glutamate decarboxylase A, PLP‑dependent | |||||
| * | ? | NC_000913 | = 1571114 | 41 (0.330) | 5 (0.040) | 5/566 | 15.7 | 11.9% | coding (932/1401 nt) | gadB | glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | = 3666596 | 34 (0.280) | coding (985/1401 nt) | gadA | glutamate decarboxylase A, PLP‑dependent | |||||
| * | ? | NC_000913 | 3986654 = | 129 (1.050) | 4 (0.030) | 4/560 | 16.3 | 3.1% | intergenic (‑647/+32) | aslA/hemY | putative Ser‑type periplasmic non‑aryl sulfatase/putative protoheme IX synthesis protein |
| ? | NC_000913 | 3986676 = | 126 (1.060) | intergenic (‑669/+10) | aslA/hemY | putative Ser‑type periplasmic non‑aryl sulfatase/putative protoheme IX synthesis protein | |||||
| * | ? | NC_000913 | = 3126943 | 122 (0.990) | 4 (0.030) | 4/558 | 16.3 | 3.2% | coding (1079/1500 nt) | glcD | glycolate oxidase subunit, FAD‑linked |
| ? | NC_000913 | = 3127065 | 123 (1.030) | coding (957/1500 nt) | glcD | glycolate oxidase subunit, FAD‑linked | |||||
| * | ? | NC_000913 | 3170246 = | 101 (0.820) | 4 (0.030) | 4/564 | 16.4 | 3.8% | coding (419/660 nt) | qseB | quorum sensing DNA‑binding response regulator in two‑component regulatory system with QseC |
| ? | NC_000913 | 3170265 = | 103 (0.860) | coding (438/660 nt) | qseB | quorum sensing DNA‑binding response regulator in two‑component regulatory system with QseC | |||||