mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 37.3% | 64.6 / 69.3 | 78 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 30.8% | 48.5 / 39.4 | 67 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 30.3% | 41.5 / 46.2 | 67 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,234,161 | 0 | G | A | 23.6% | 243.3 / 72.5 | 127 | R99C (CGT→TGT) | higB | mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system |
| * | NC_000913 | 3,781,140 | 0 | A | G | 21.2% | 209.9 / 16.2 | 102 | intergenic (+123/‑75) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 1,097,158 | 0 | C | T | 20.8% | 103.3 / 28.5 | 81 | intergenic (+329/+407) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| Marginal new junction evidence (lowest skew 10 of 84 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 120 (0.980) | 35 (0.300) | 32/580 | 5.9 | 23.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 113 (0.950) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1096961 = | 84 (0.690) | 30 (0.340) | 19/438 | 6.8 | 33.8% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 56 (0.630) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1207790 = | 98 (0.800) | 16 (0.140) | 16/566 | 10.6 | 14.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 91 (0.790) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4542682 = | 116 (0.950) | 15 (0.130) | 13/580 | 12.3 | 11.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 115 (0.970) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 10 (0.080) | 8/584 | 15.1 | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2066551 = | 95 (0.780) | 9 (0.080) | 7/584 | 15.8 | 8.8% | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2102204 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 687846 = | NA (NA) | 6 (0.070) +74 bp |
3/450 | 15.9 | 6.1% | intergenic (‑99/+151) | gltI/insH1 | glutamate/aspartate periplasmic binding protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | = 1397337 | 123 (1.010) | intergenic (+245/‑28) | insH1/ynaJ | IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein | |||||
| * | ? | NC_000913 | 1781359 = | 112 (0.920) | 5 (0.040) | 5/582 | 17.2 | 4.5% | intergenic (+20/‑36) | ydiR/ydiS | putative electron transfer flavoprotein, FAD‑binding subunit/putative oxidoreductase |
| ? | NC_000913 | 1781381 = | 105 (0.880) | intergenic (+42/‑14) | ydiR/ydiS | putative electron transfer flavoprotein, FAD‑binding subunit/putative oxidoreductase | |||||
| * | ? | NC_000913 | = 1207805 | 108 (0.880) | 4 (0.030) | 4/566 | 17.7 | 4.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 91 (0.790) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4519310 | 139 (1.140) | 5 (0.040) | 4/580 | 18.0 | 3.6% | intergenic (+86/+28) | insB1/yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| ? | NC_000913 | = 4519316 | 136 (1.150) | intergenic (+92/+22) | insB1/yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element | |||||