mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 40.5% | 54.6 / 88.3 | 80 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,097,392 | 1 | . | G | 30.3% | 139.8 / 142.8 | 99 | intergenic (+563/+173) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| * | NC_000913 | 1,097,392 | 2 | . | G | 29.3% | 143.4 / 138.1 | 99 | intergenic (+563/+173) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| * | NC_000913 | 4,296,286 | 0 | C | T | 27.3% | 124.5 / 42.8 | 77 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,608,703 | 0 | A | G | 24.4% | 164.5 / 17.8 | 90 | intergenic (+54/+48) | zntA/tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| * | NC_000913 | 3,608,696 | 0 | T | G | 23.3% | 185.3 / 16.3 | 90 | intergenic (+47/+55) | zntA/tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| * | NC_000913 | 4,296,191 | 0 | A | C | 22.2% | 103.6 / 45.6 | 90 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,029,732 | 0 | A | . | 21.3% | 351.2 / 92.6 | 130 | coding (238/1191 nt) | rlmI | 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent |
| * | NC_000913 | 4,296,190 | 0 | A | G | 20.7% | 109.5 / 39.2 | 90 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 149 (1.170) | 12 (0.100) | 10/580 | 14.5 | 7.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 148 (1.190) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 7 (0.060) | 6/580 | 17.1 | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4542690 | 149 (1.170) | 5 (0.040) | 5/580 | 17.9 | 3.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 147 (1.190) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1130956 = | 112 (0.880) | 5 (0.040) | 5/588 | 18.1 | 4.1% | intergenic (‑93/‑62) | flgA/flgB | assembly protein for flagellar basal‑body periplasmic P ring/flagellar component of cell‑proximal portion of basal‑body rod |
| ? | NC_000913 | 1131148 = | 122 (0.970) | coding (131/417 nt) | flgB | flagellar component of cell‑proximal portion of basal‑body rod | |||||
| * | ? | NC_000913 | = 1492581 | 122 (0.950) | 3 (0.020) | 3/586 | 19.8 | 2.4% | coding (112/1641 nt) | trg | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| ? | NC_000913 | = 1492710 | 124 (0.990) | coding (241/1641 nt) | trg | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor | |||||
| * | ? | NC_000913 | = 2278938 | 132 (1.030) | 3 (0.020) | 3/592 | 19.9 | 2.3% | coding (823/1191 nt) | bcr | bicyclomycin/cysteine/sulfonamide efflux transporter |
| ? | NC_000913 | = 2279057 | 119 (0.940) | coding (704/1191 nt) | bcr | bicyclomycin/cysteine/sulfonamide efflux transporter | |||||