mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 44,145 | C→T | intergenic (+16/‑35) | fixB → / → fixC | putative electron transfer flavoprotein, NAD/FAD‑binding domain and ETFP adenine nucleotide‑binding domain‑like protein/putative oxidoreductase |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| RA | 300,196 | A→G | F247L (TTC→CTC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 311,982 | G→A | intergenic (‑646/‑130) | ecpR ← / → ykgL | putative transcriptional regulator for the ecp operon/uncharacterized protein |
| RA | 323,369 | G→A | V344V (GTG→GTA) | ykgF → | ferridoxin‑like LutB family protein; putative electron transport chain YkgEFG component |
| RA | 1,055,493 | G→A | A229V (GCA→GTA) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| RA | 1,198,567 | T→C | intergenic (‑330/‑128) | ymfE ← / → lit | e14 prophage; putative inner membrane protein/T4 phage exclusion protein; cell death peptidase, e14 prophage |
| RA | 1,250,264 | C→T | G192D (GGT→GAT) | dhaK ← | dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit |
| MC JC | 1,299,499 | Δ1,199 bp | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,323,415 | A→G | N66D (AAT→GAT) | yciV → | PHP domain protein |
| RA | 1,466,733 | A→G | pseudogene (1342/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,529,218 | C→T | pseudogene (1317/2037 nt) | rhsE → | pseudogene, Rhs family |
| RA | 1,632,713 | C→T | intergenic (‑428/‑359) | ydfJ ← / → ydfK | pseudogene, MFS transporter family; interrupted by Qin prophage;Phage or Prophage Related; putative transport protein/cold shock protein, function unknown, Qin prophage |
| RA | 1,807,322 | G→A | intergenic (+23/‑78) | pfkB → / → ydiZ | 6‑phosphofructokinase II/uncharacterized protein |
| RA | 1,926,995 | C→T | L615L (TTG→TTA) | ptrB ← | protease II |
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,230,157 | G→A | L77L (CTG→TTG) | dusC ← | tRNA‑dihydrouridine synthase C |
| RA | 2,734,543 | (C)8→9 | coding (492/732 nt) | yfiH ← | UPF0124 family protein |
| RA | 2,759,096 | G→A | A38T (GCT→ACT) | yfjI → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,810,153 | Δ1 bp | coding (537/738 nt) | ygaZ → | putative L‑valine exporter, norvaline resistance protein |
| RA | 2,830,525 | C→A | A238D (GCT→GAT) | srlQ → | D‑arabinose 5‑phosphate isomerase |
| RA | 2,832,018 | T→C | D91G (GAC→GGC) | norR ← | anaerobic nitric oxide reductase DNA‑binding transcriptional activator |
| RA | 2,939,515 | C→A | R50S (CGC→AGC) | fucR → | l‑fucose operon activator |
| RA | 3,124,889 | G→A | R191* (CGA→TGA) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,178,691 | G→A | A193T (GCA→ACA) | tolC → | transport channel |
| RA | 3,422,484 | A→G | N17D (AAC→GAC) | yhdZ → | putative amino acid ABC transporter ATPase |
| RA | 3,507,944 | T→C | Y216C (TAC→TGC) | php ← | phosphotriesterase homology protein |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,658,486 | T→C | F41L (TTC→CTC) | gadE → | gad regulon transcriptional activator |
| RA | 3,705,032 | G→A | V253V (GTC→GTT) | dppB ← | dipeptide/heme ABC transporter permease |
| RA | 3,815,810 | Δ1 bp | intergenic (‑42/+24) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,951,559 | +A | pseudogene (18/663 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
| RA | 4,187,507 | A→C | N720H (AAC→CAC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,198,922 | A→G | T45A (ACG→GCG) | nfi → | endonuclease V; deoxyinosine 3' endonuclease |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,315,210 | G→C | A110G (GCC→GGC) | phnO ← | aminoalkylphosphonate N‑acetyltransferase |
| RA | 4,389,418 | C→T | V315I (GTT→ATT) | psd ← | phosphatidylserine decarboxylase |
| JC | 4,397,624 | (GCTGGC)3→2 | coding (213‑218/1848 nt) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,520,226 | A→G | V33V (GTT→GTC) | yjhU ← | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| RA | 4,601,280 | C→T | A80T (GCT→ACT) | dnaT ← | DNA biosynthesis protein (primosomal protein I) |