mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 32.3% | 29.5 / 43.2 | 63 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 29.3% | 129.1 / 51.9 | 83 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 27.1% | 47.4 / 36.2 | 63 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,472,236 | 0 | T | G | 23.6% | 254.8 / 15.8 | 127 | T54P (ACC→CCC) | pyrB | aspartate carbamoyltransferase, catalytic subunit |
| * | NC_000913 | 3,781,120 | 0 | T | C | 21.9% | 153.5 / 25.7 | 82 | intergenic (+103/‑95) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 4,296,286 | 0 | C | T | 21.0% | 175.4 / 26.1 | 81 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,311,197 | 0 | G | T | 20.3% | 240.3 / 12.6 | 115 | E37* (GAA→TAA) | tonB | membrane spanning protein in TonB‑ExbB‑ExbD transport complex |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 105 (0.780) | 15 (0.120) | 15/566 | 12.8 | 12.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 118 (0.930) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1096961 = | 111 (0.820) | 24 (0.240) | 9/438 | 12.8 | 23.0% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 79 (0.800) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1207805 | 102 (0.760) | 12 (0.090) | 12/566 | 14.3 | 10.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 118 (0.930) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 150 (1.110) | 9 (0.070) | 9/580 | 16.4 | 5.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 149 (1.140) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 150 (1.110) | 9 (0.070) | 8/580 | 17.1 | 5.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 151 (1.160) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4012905 = | 144 (1.070) | 8 (0.060) | 7/584 | 17.9 | 5.2% | intergenic (‑89/‑148) | metR/metE | methionine biosynthesis regulon transcriptional regulator/5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| ? | NC_000913 | 4013030 = | 152 (1.160) | intergenic (‑214/‑23) | metR/metE | methionine biosynthesis regulon transcriptional regulator/5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase | |||||
| * | ? | NC_000913 | 2704097 = | 128 (0.950) | 4 (0.030) | 4/572 | 20.0 | 3.2% | intergenic (‑34/+238) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) |
| ? | NC_000913 | 2704191 = | 122 (0.950) | intergenic (‑128/+144) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) | |||||
| * | ? | NC_000913 | 2300073 = | 119 (0.880) | 4 (0.030) | 4/586 | 20.3 | 3.3% | coding (188/696 nt) | napG | ferredoxin‑type protein |
| ? | NC_000913 | 2300204 = | 118 (0.890) | coding (57/696 nt) | napG | ferredoxin‑type protein | |||||
| * | ? | NC_000913 | = 539423 | 119 (0.880) | 4 (0.030) | 4/586 | 20.3 | 3.6% | coding (277/1362 nt) | allB | allantoinase |
| ? | NC_000913 | = 539503 | 100 (0.760) | coding (357/1362 nt) | allB | allantoinase | |||||
| * | ? | NC_000913 | = 2713829 | 126 (0.940) | 3 (0.020) | 3/576 | 21.0 | 2.5% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 111 (0.860) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||