mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 31.2% | 43.4 / 55.9 | 81 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 30.1% | 41.2 / 50.2 | 81 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 26.5% | 145.7 / 46.9 | 85 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 145 (0.840) | 38 (0.300) | 16/438 | 11.9 | 28.3% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 86 (0.680) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 4542690 | 277 (1.600) | 9 (0.050) | 7/580 | 20.9 | 3.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 187 (1.110) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 275 (1.580) | 6 (0.040) | 6/580 | 21.7 | 2.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 188 (1.120) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4012905 = | 191 (1.100) | 7 (0.040) | 6/584 | 21.8 | 3.7% | intergenic (‑89/‑148) | metR/metE | methionine biosynthesis regulon transcriptional regulator/5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| ? | NC_000913 | 4013030 = | 182 (1.070) | intergenic (‑214/‑23) | metR/metE | methionine biosynthesis regulon transcriptional regulator/5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase | |||||
| * | ? | NC_000913 | = 315651 | NA (NA) | 4 (0.020) | 4/582 | 23.5 | NA | noncoding (423/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315703 | NA (NA) | noncoding (475/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 3744776 = | 165 (0.950) | 4 (0.020) | 4/588 | 23.6 | 2.5% | coding (449/474 nt) | yiaM | 2,3‑diketo‑L‑gulonate TRAP transporter small permease protein |
| ? | NC_000913 | 3744897 = | 152 (0.890) | coding (94/1278 nt) | yiaN | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein | |||||
| * | ? | NC_000913 | 3610605 = | 166 (0.960) | 3 (0.020) | 3/582 | 24.4 | 1.8% | coding (1129/1218 nt) | yhhS | putative arabinose efflux transporter |
| ? | NC_000913 | = 3610601 | 164 (0.970) | coding (1133/1218 nt) | yhhS | putative arabinose efflux transporter | |||||
| * | ? | NC_000913 | 373026 = | 123 (0.710) | 3 (0.020) | 3/588 | 24.6 | 2.6% | coding (106/951 nt) | mhpF | acetaldehyde‑CoA dehydrogenase II, NAD‑binding |
| ? | NC_000913 | 373118 = | 105 (0.620) | coding (198/951 nt) | mhpF | acetaldehyde‑CoA dehydrogenase II, NAD‑binding | |||||
| * | ? | NC_000913 | = 718501 | 144 (0.830) | 3 (0.020) | 3/592 | 24.7 | 2.1% | coding (1960/2199 nt) | speF | ornithine decarboxylase isozyme, inducible |
| ? | NC_000913 | = 718510 | 142 (0.830) | coding (1951/2199 nt) | speF | ornithine decarboxylase isozyme, inducible | |||||