mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 28.6% | 60.0 / 21.2 | 44 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 21.6% | 37.3 / 11.3 | 37 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 21.6% | 32.2 / 12.5 | 37 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 83 (1.130) | 15 (0.280) | 5/440 | 6.7 | 21.2% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 51 (0.950) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 4542690 | 205 (2.790) | 7 (0.100) | 6/582 | 7.8 | 4.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 129 (1.810) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 203 (2.770) | 4 (0.060) | 4/582 | 8.9 | 2.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 132 (1.850) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 803336 = | 67 (0.910) | 4 (0.060) | 4/594 | 9.0 | 4.8% | intergenic (+16/‑167) | ybhI/ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein |
| ? | NC_000913 | 803435 = | 93 (1.280) | intergenic (+115/‑68) | ybhI/ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein | |||||
| * | ? | NC_000913 | 596994 = | 64 (0.870) | 4 (0.060) | 4/594 | 9.0 | 4.9% | intergenic (+21/‑137) | cusC/cusF | copper/silver efflux system, outer membrane component/periplasmic copper‑ and silver‑binding protein |
| ? | NC_000913 | 803435 = | 93 (1.280) | intergenic (+115/‑68) | ybhI/ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein | |||||
| * | ? | NC_000913 | = 353277 | 68 (0.930) | 3 (0.040) | 3/576 | 9.5 | 4.6% | coding (572/1887 nt) | prpE | propionate‑‑CoA ligase |
| ? | NC_000913 | = 353381 | 60 (0.850) | coding (676/1887 nt) | prpE | propionate‑‑CoA ligase | |||||
| * | ? | NC_000913 | 3515395 = | 67 (0.910) | 3 (0.040) | 3/582 | 9.6 | 4.4% | coding (519/837 nt) | dam | DNA adenine methyltransferase |
| ? | NC_000913 | 3515538 = | 66 (0.930) | coding (376/837 nt) | dam | DNA adenine methyltransferase | |||||
| * | ? | NC_000913 | = 4294253 | 102 (1.390) | 3 (0.040) | 3/600 | 9.7 | 2.8% | intergenic (+114/‑228) | nrfG/gltP | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG/glutamate/aspartate:proton symporter |
| ? | NC_000913 | = 4294270 | 104 (1.420) | intergenic (+131/‑211) | nrfG/gltP | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG/glutamate/aspartate:proton symporter | |||||
| * | ? | NC_000913 | 2079640 = | 62 (0.840) | 3 (0.040) | 3/594 | 9.7 | 3.4% | coding (952/1059 nt) | yeeA | putative transporter, FUSC family inner membrane protein |
| ? | NC_000913 | 3378744 = | 107 (1.470) | intergenic (‑93/+126) | rplM/zapE | 50S ribosomal subunit protein L13/divisome ATPase | |||||
| * | ? | NC_000913 | = 1558352 | 67 (0.910) | 3 (0.040) | 3/600 | 9.7 | 3.4% | coding (666/987 nt) | ddpD | D,D‑dipeptide ABC transporter ATPase |
| ? | NC_000913 | = 1958386 | 106 (1.440) | intergenic (‑254/+134) | torY/cutC | TMAO reductase III (TorYZ), cytochrome c‑type subunit/copper homeostasis protein | |||||