| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | = 437908 | 405 (0.260) | 404 (0.270) +ATAA |
66/244 | 26.9 | 50.7% | intergenic (‑212/+210) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437909 = | 405 (0.260) | intergenic (‑213/+209) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 717 total aligned reads displayed.
TAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTTTAACATT > CP016816/437787‑438036 | aattatataaaTAAAAATTTTTTTTTTAAAATAAATATTTTAGTAAATTAATAAAATCAAAAAACTCTATATTATATATAGAGTTA‑‑‑A‑‑TTA‑‑T‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGAt < 1:2556549/120‑1 (MQ=255) aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGAt > 1:2246580/1‑128 (MQ=255) tAGAAATAAAAATTGTATTGTTAAAATAAATAATTTAGGAAATGAAGCAAAGCAAAAACATACATATTACCTATAGACTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATTTATATATATATATATAT‑‑‑‑‑‑ATATCA‑‑GCA‑‑‑‑‑‑AGCTATCataa > 2:2364176/1‑125 (MQ=255) gataTAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGAAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑TTA‑‑T‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATa < 1:1282692/125‑1 (MQ=255) aaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATTT‑‑‑‑TCA‑‑‑‑‑‑AGCGATCAGCATAatat > 1:2785900/1‑128 (MQ=255) aaaaaTTGTATTTTTAAAATATATATTTTATGAAATTAAGAAAATAAAAAAACTACATATTAACTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATaaaa < 2:1392677/128‑1 (MQ=255) aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAAAGAAGCACAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGt < 1:1986957/128‑1 (MQ=255) tattttttttttAAAATAAATATTTTATCTATATATGAAAATCAAAAACCTATATATAAACTATATAGATA‑‑‑ATTT‑‑‑‑T‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTg < 1:190997/121‑1 (MQ=255) ttttATTTTTAAAATAAATATATTATTAAATTAATAAAATAAAAAACCTCAATATTAAATATATAGTTATTTA‑‑TA‑‑‑T‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTg < 2:594738/125‑1 (MQ=255) ttGTATTTTTAAAATAAATATTTTAGTTAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATgggg < 2:3006679/128‑3 (MQ=255) tGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGa > 2:264053/1‑128 (MQ=255) aTTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGCTCAGCATAAAATGCTGatag > 1:3222784/1‑125 (MQ=255) ttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGATATTTat > 1:796074/1‑127 (MQ=255) ttAAAATAAATATTTTAGGAAATGAAGAAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGt < 2:156535/128‑1 (MQ=255) tAAAATAAATATTTTAGGATATGAATCAAAGCAAAAAACTCCATATTAACTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATc < 2:821721/128‑1 (MQ=255) tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATTGTGATATTTAGATCTg > 1:259835/1‑128 (MQ=255) tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAA‑‑‑‑ACT‑‑‑‑‑‑AGATATGATAATAAAATTGTGAATTATAGAtgtg > 2:1339030/1‑128 (MQ=255) aaaaTAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATATATATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑AAA‑‑‑‑‑‑AGCTATCAGCATAAAATTGTGAAATTTAg > 2:544026/1‑128 (MQ=255) aaataaaaTTTTTATGTAATGTATCAAATAAAAAAACTCTATATTAACTATAGAGTTA‑‑‑T‑‑T‑‑‑‑T‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg < 2:1643419/128‑1 (MQ=255) aataataTTTTATTCTATGAAGCACAGAAAAAACATAGATATAATCTATAGAGTTA‑‑‑A‑‑TTA‑‑A‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg < 1:1424391/125‑1 (MQ=255) aaataTTTTATGATATGAATCAAAGCAAAACACTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGt‑t < 2:3051271/128‑1 (MQ=255) aaataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GAA‑‑‑‑‑‑AGCGATCTCAATAAAATCTTGAAATATATATCTGAgat > 1:161374/1‑126 (MQ=255) ttatTTTAGTAATTGAAGATAAGAAAAAATATCAATTTTAAATATAGAGTTT‑‑‑A‑‑TTATAT‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGt‑t < 2:2606720/127‑1 (MQ=255) atatatAAGGAACTCAAGCAAAGCAAAAACCTCCATATTACCTATAGAGATA‑‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGGGAAATTTAGATCTGAGT‑Tg‑g < 2:1372682/128‑1 (MQ=255) atatTTTAGGAAATTAATCAAATCAAAAACCTCCATATAACATATAGAGAGA‑‑‑A‑‑T‑‑‑‑GATATATATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg < 2:2447551/128‑1 (MQ=255) atatTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATATATATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑TCA‑‑‑‑‑‑AGCGATCAGAATAAAATTTTGAAATTTAGATCTGAg > 2:1878102/1‑128 (MQ=255) atatTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGTTGAAATTTAGATCTGatgt > 1:682713/1‑125 (MQ=255) atatTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GTA‑‑‑‑‑‑AGCGATCATCATAAAATGGTGAAATTTAGATCTGAGT‑Tg‑g > 1:1484965/1‑128 (MQ=255) atTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGAATATAATGGTGAAATTTAGATCTGAGt‑ttctc > 2:1050481/1‑124 (MQ=255) tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑TCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTATATCTGAGT‑TG‑Gta > 1:2706228/1‑127 (MQ=255) tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGATATTTATATCTGAGT‑TG‑TTc > 2:148897/1‑128 (MQ=255) ttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGAGATCATAAAAAAATTGTGAAATTTATATCTGAGT‑TG‑Gtat > 2:2540597/1‑126 (MQ=255) tAGTAAATTAAGCAAACCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCtt < 1:3101967/128‑1 (MQ=255) tAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCTATCAGCATAAAATAGTGAAATTTATATCTTAGT‑TT‑GTCtt > 2:2217071/1‑128 (MQ=255) ggAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGTTGAAATTTAGATCTGAGT‑TT‑GTCTTaa > 2:78488/1‑128 (MQ=255) ataTGAAGAAAATCATAATCCTCAATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATGTATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGt < 2:1699123/126‑1 (MQ=255) gAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCTATCAGCATAAAAAGTTGAAATTTATATCTGATT‑TG‑TTCTTAAATTTGt > 1:1817985/1‑128 (MQ=255) gAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GAA‑‑‑‑‑‑AGAGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TT‑GTATAAAATTTGt > 1:3171520/1‑128 (MQ=255) agcaaagcaaAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GAA‑‑‑‑‑‑AGCGATCATAATAAATTTGTTAAATATAGATCTGTGT‑TT‑GTCTTAAATTTGTAg > 2:2281272/1‑128 (MQ=255) tcaaatcaaaAAACTACATATTAACTATAGAGTTA‑‑‑A‑‑TTATAT‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGt < 2:2706228/127‑1 (MQ=255) gcaaagaaaaCACCTACATATTATATATAGAGTTA‑‑‑T‑‑T‑‑‑‑GAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGttt < 1:1002922/128‑1 (MQ=255) aatcaaaAAAATCCATATTATCTATATAGATA‑‑‑A‑‑T‑‑‑‑TATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGtttt < 2:2806238/125‑1 (MQ=255) agcaaaAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGAGCTCAGAATAAAATGTTGATATTTAGATCTGAGT‑TG‑GTCTTAAATGTGTAGTTtatat > 2:2038319/1‑128 (MQ=255) agcaaaAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATATATAATAA‑‑‑‑‑‑ATCGATCATCAAAAAATTGTGAAATATAGATATGAGT‑TT‑GTAATAAATTTTTAtttttt > 1:2018120/1‑128 (MQ=255) agcaaaAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑TCA‑‑‑‑‑‑AGCGATCAGAATAAAATGGTGAATATTATATCTGATT‑TT‑GTATTAAATTTGTATTTtttattt > 2:465514/1‑128 (MQ=255) gcaaaAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTGAGATCTGAGT‑TT‑GTCTTAATTGTGGATTTttta > 2:1607821/1‑128 (MQ=255) gcaaaAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GAA‑‑‑‑‑‑CGCGCGCAGCAGATAATGGGGAGAATTAGAGCTGAGTGTGTGTTATATATTTATAGTTtttata > 2:432452/1‑127 (MQ=255) caaaAACATCTATATTAACTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTtttat < 2:2878484/128‑1 (MQ=255) caaaAACATCAATATTAAATATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTtttat < 1:834091/128‑1 (MQ=255) aaaaCCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑TCA‑‑‑‑‑‑AGATATCAGCATAAAATTGTGATATATATATCTGAGT‑TT‑CTCTTAAATTTGTAGTTtttattt > 2:1021748/1‑128 (MQ=255) aaaCCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGAGATCAGAATAAATTGGTGATATTTATATCTGAGT‑TG‑GTGTTAATTTTGTAGTttttttttt > 1:2429787/1‑127 (MQ=255) aCCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑TCA‑‑‑‑‑‑AGCTATCATAAAAAAATGGTTAAATTTATATCTTAGT‑TG‑GTGTAAATTTTTTATTTTTTATTtata > 2:2094979/1‑128 (MQ=255) ccTCAATATTAACTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAg < 1:53021/128‑1 (MQ=255) actatatTATATATAGATATA‑‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGAGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTta < 2:354378/125‑1 (MQ=255) ccATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATATAAATAT‑‑‑‑AAA‑‑‑‑‑‑AGCTATAATAATAAAATTGTGAAATATATCTCTGAGA‑TT‑GTCTAAAATTATTAGTTTTtatatatatt > 2:1923884/1‑126 (MQ=255) atatTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATTGTGAAATTTATATCTGAGT‑TT‑GTCTTAAATTTTTAGTTTTTATTTATAGTTtat > 2:645668/1‑128 (MQ=255) atatTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GAT‑‑‑‑‑‑AGAGATCAGAATAAAATGGTGATATTTAGATCTGAGT‑GT‑GTCTGATATTTTTTTTTTTTATTTATATTTtat > 1:1158395/1‑128 (MQ=255) ttACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GATAT‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑ACA‑‑‑‑‑‑AGCGATCAGAAAAAAAAGGTGATATTTAGATCTGAGT‑TG‑GTGATAAATATATATTTTTTATTTATAGTTTATaaa > 2:2017491/1‑128 (MQ=255) ttACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑TTCTTAAATTTTTAGTTTTTATTTATAGTTTATATAGTta > 2:744116/1‑128 (MQ=255) taaCCTATAGAGATA‑‑‑T‑‑T‑‑‑‑T‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAATATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTta < 2:887315/126‑1 (MQ=255) tACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑GAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GAA‑‑‑‑‑‑AGCGATCAGAATAAAATGGTGAACTTTATATCTTATT‑TG‑TTCTTAAATTTTTAGTTTTTATTTATAGTTTATAAAGtt > 2:2151344/1‑128 (MQ=255) tACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑ATATAATATAGCTATCAAAAAAAAATTGTTAAATATATATCTGATT‑TT‑GTATTAAATTTTTATTTTTTATATATATTTtatat > 2:3093220/1‑127 (MQ=255) agagTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCTATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TT‑GTCTTAAATTTTTAGTTTTTATTTATAGTTTATAAATTTAATAAtatata > 1:573348/1‑126 (MQ=255) gttaattatatatatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GGCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAAttt < 1:3043442/117‑1 (MQ=39) gttaatgatatatatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑TCA‑‑‑‑‑‑AGCGATCATCATAAAATGTTGAAATATAGATCTGAGT‑TT‑GTCTTAAATTTATATTTTATATTTATATTTTATATATTTAATAAttt > 1:2907313/12‑128 (MQ=25) gttaatgatatatatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GAA‑‑‑‑‑‑AGCGATCAGAATAAAATGGTTAAATTTATATCTGATT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATATTATATAAAGATAATAAttt > 2:173205/12‑128 (MQ=25) ataattatatatatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa < 2:144456/118‑1 (MQ=255) taatgatatatatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑TAA‑‑‑‑‑‑AGAGATAAGAAAAAAATAGTGAAATTTATATCTGAGT‑TT‑GTATTAAATTTTTATTTTTTATTTATATTTTATATATTTATTAATTTat > 1:1343393/10‑127 (MQ=16) atatatatatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtt < 1:1254797/122‑1 (MQ=255) atatatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTa < 1:238873/126‑1 (MQ=255) atatatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTa > 1:1577356/3‑128 (MQ=255) atatatatatataaatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTa < 1:283130/126‑1 (MQ=255) atatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCT‑‑‑‑‑‑AGCGCTCAGAATAAATTTGTGATATTTATATCTGTGT‑TT‑TTCTTAAATTTGTAGTTTTTATATATAGTTTATAAAGTTAATAATTTAGATTTTTTat > 2:699864/1‑128 (MQ=255) tatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑TCA‑‑‑‑‑‑AGCGATCAGCAAAAAATGGTGAAATTTATATCTGAGT‑TT‑GTGTTAAATTTGTATTTTTTATTTATATTTTATAAATATAATAATTTATATTTTTAata > 1:362987/1‑128 (MQ=255) tatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAata < 1:728282/128‑1 (MQ=255) tatatatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGAACAGCATAAAATGGTTAAATTTATATCTGAGT‑TT‑GTCTTAAATTTTTAGTTTTTATATATAGTTTATAAAGTTAATAATTTATATTTTTAata > 1:431840/1‑128 (MQ=255) tatatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑aCA‑‑‑‑‑‑AGCGATCAGAATAAAATTGTTAAATTTATATCTGAGT‑TT‑GTCTTAAATATTTATTTTTTATATATATTTTATAAATTTAAAATTatatattttatatatttt > 1:2155014/1‑128 (MQ=255) atatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTa < 1:3080367/128‑1 (MQ=255) atatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCAAAAAATTGTGAAATTTAGATCTGAGT‑TT‑GTATTAAATTTGTAGTTTTTATTTATAGTTTATAAAGATAATAATTTATATATTTAATATTTTa > 2:1122533/1‑128 (MQ=255) tatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑TCA‑‑‑‑‑‑AGAGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTaa < 1:91892/128‑1 (MQ=255) tatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATATAATGGTGAAATTTAGATATGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTaa < 1:2981885/128‑1 (MQ=255) tatatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTaa < 1:485537/128‑1 (MQ=255) atatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTGGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTaaa > 2:1965010/1‑128 (MQ=255) tatatatatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTaaaa > 1:1187469/1‑128 (MQ=255) atatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTaa < 1:253815/128‑1 (MQ=255) atatatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTaa > 2:1173237/1‑128 (MQ=255) atatatat‑‑‑‑‑‑atat‑‑‑‑GCT‑‑‑‑‑‑AGCGAGCAGCATAAAATTTTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATATTAAAACTTAata < 2:1824125/128‑1 (MQ=255) tatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAatat < 1:2942829/128‑1 (MQ=255) tatatat‑‑‑‑‑‑atat‑‑‑‑GCA‑‑‑‑‑‑AGAGATCAGCATAAAATGTTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAatat < 2:1249941/128‑1 (MQ=255) tatatat‑‑‑‑‑‑atat‑‑‑‑GAA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAatat < 1:1716228/128‑1 (MQ=255) tat‑‑‑‑‑‑atgg‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTTAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATAttttt < 1:3272268/128‑1 (MQ=255) atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTTTaa < 2:3118275/128‑1 (MQ=255) atat‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTTTaa > 1:636854/1‑128 (MQ=255) at‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTTTAACa < 1:2338655/128‑1 (MQ=255) at‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTTTAACa > 2:3205250/1‑128 (MQ=255) at‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTTTAACa < 1:2637672/128‑1 (MQ=255) t‑‑‑‑GCA‑‑‑‑‑‑AGCGATCCGCATAAACTGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTTTAACAt < 1:1100715/128‑1 (MQ=255) t‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTTTAACAt < 1:1377276/128‑1 (MQ=255) t‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTTTAACAt < 2:2949263/128‑1 (MQ=255) gCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTTTAACAtt > 2:3263/1‑128 (MQ=255) | TAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTA‑‑‑A‑‑T‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑‑‑ATAT‑‑‑‑GCA‑‑‑‑‑‑AGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGT‑TG‑GTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAAAACTTAATATTTTTTAACATT > CP016816/437787‑438036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |