Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,606,886 Δ11,558 bp [lsrF][marC] [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1606886 1618443 11558 48 [0] [0] 48 [lsrF]–[marC] [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16068850 (0.000)48 (0.950) 45/296 0.3 100% coding (786/876 nt) lsrF putative autoinducer‑2 (AI‑2) aldolase
?NC_000913 1618444 = 0 (0.000)coding (465/666 nt) marC UPF0056 family inner membrane protein

ATTGTTGCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGGTGGCGATGATGAAAGCCGTACAGGCGGTGGTTCACCATAACGAAACGGCTGATCGGGCATATGAACTCTATCTGAGTGAAAAACAGTAACTGCGGATCTAAGGAGAAGAATTATGCACGTCACACTGGTTGAAATTAACGTTCATGA  >  NC_000913/1606739‑1607033
                                                                                                                                                  |                                                                                                                                                    
aTTGTTGCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacc                                                                                                                                                  >  2:537242‑M1/1‑147 (MQ=255)
   gttgCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaa                                                                                                                                               <  1:698554‑M1/151‑8 (MQ=255)
     tgCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGGTATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatc                                                                                                                                             >  2:451992‑M1/1‑142 (MQ=255)
     tgCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaat                                                                                                                                              <  1:243546‑M1/150‑9 (MQ=255)
       ccGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcag                                                                                                                                           <  1:461042‑M1/151‑12 (MQ=255)
         ggATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcg                                                                                                                                         >  2:488566‑M1/1‑138 (MQ=255)
          gATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcg                                                                                                                                         >  1:479977‑M1/1‑137 (MQ=255)
            tGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcga                                                                                                                                        >  2:769467‑M1/1‑135 (MQ=255)
               ccGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggtt                                                                                                                                   <  2:427743‑M1/151‑20 (MQ=255)
                      ccATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactct                                                                                                                            >  1:209247‑M1/1‑125 (MQ=255)
                      ccATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactct                                                                                                                            >  1:5342‑M1/1‑125 (MQ=255)
                              aTTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcact                                                                                                                    >  2:349133‑M1/1‑117 (MQ=255)
                                 gCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgt                                                                                                                  <  2:80675‑M1/150‑37 (MQ=255)
                                   tGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtgg                                                                                                                >  1:209367‑M1/1‑112 (MQ=255)
                                       ggTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgc                                                                                                            <  2:220417‑M1/150‑43 (MQ=255)
                                             aaaTTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagcta                                                                                                     <  2:9377‑M1/151‑50 (MQ=255)
                                              aaTTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaa                                                                                                    <  2:482852‑M1/151‑51 (MQ=255)
                                              aaTTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagcta                                                                                                     >  2:240008‑M1/1‑101 (MQ=255)
                                                    cGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatc                                                                                               >  2:388788‑M1/1‑95 (MQ=255)
                                                      gAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcata                                                                                            <  1:676123‑M1/151‑59 (MQ=255)
                                                        gcgcGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgc                                                                                          <  2:72358‑M1/151‑61 (MQ=255)
                                                            gAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctat                                                                                       <  2:699898‑M1/150‑64 (MQ=255)
                                                              ggCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatgg                                                                                     >  1:151373‑M1/1‑85 (MQ=255)
                                                                 gcTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcc                                                                                 >  2:121999‑M1/1‑82 (MQ=255)
                                                                    ggAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccg                                                                               <  1:270578‑M1/150‑72 (MQ=255)
                                                                    ggAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttccc                                                                                <  1:51981‑M1/149‑71 (MQ=255)
                                                                     gAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGCGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccgg                                                                              >  1:713669‑M1/1‑78 (MQ=255)
                                                                        aTGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccg                                                                          <  1:192516‑M1/151‑77 (MQ=255)
                                                                            gCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTATCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggc                                                                        >  2:769575‑M1/1‑71 (MQ=255)
                                                                                    gCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggc                                                              <  2:75291‑M1/151‑89 (MQ=255)
                                                                                       aTCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcatt                                                           >  1:70176‑M1/1‑60 (MQ=255)
                                                                                        tCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcatt                                                           <  2:270399‑M1/150‑92 (MQ=255)
                                                                                          gATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgcc                                                        >  1:723846‑M1/1‑57 (MQ=255)
                                                                                          gATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgcc                                                        >  1:201494‑M1/1‑57 (MQ=255)
                                                                                           aTCAGGGCGCTTCTGGCGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgcc                                                        >  1:589754‑M1/1‑56 (MQ=255)
                                                                                                 gcgcTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggca                                                 <  1:257096‑M1/151‑102 (MQ=255)
                                                                                                         ggTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaag                                            <  1:69241‑M1/148‑107 (MQ=255)
                                                                                                           tgtgGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaat                                       >  2:377907‑M1/1‑40 (MQ=255)
                                                                                                                atatGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattgg                                  <  1:412868‑M1/151‑117 (MQ=255)
                                                                                                                         gTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggtt                         <  1:267927‑M1/151‑126 (MQ=255)
                                                                                                                              atTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatct                    >  2:581002‑M1/1‑21 (MQ=255)
                                                                                                                              atTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatct                    <  1:168351‑M1/151‑131 (MQ=255)
                                                                                                                                 ttCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttc                  <  1:704465‑M1/150‑133 (MQ=255)
                                                                                                                                  tCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttcc                 <  1:83049‑M1/150‑134 (MQ=255)
                                                                                                                                    cAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagc              >  2:283470‑M1/1‑15 (MQ=255)
                                                                                                                                        cTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctctt          >  1:131012‑M1/1‑11 (MQ=255)
                                                                                                                                             cATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgac     <  2:158068‑M1/151‑146 (MQ=255)
                                                                                                                                                ccGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttg  <  2:204295‑M1/151‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
ATTGTTGCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGGTGGCGATGATGAAAGCCGTACAGGCGGTGGTTCACCATAACGAAACGGCTGATCGGGCATATGAACTCTATCTGAGTGAAAAACAGTAACTGCGGATCTAAGGAGAAGAATTATGCACGTCACACTGGTTGAAATTAACGTTCATGA  >  NC_000913/1606739‑1607033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.