| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,606,886 | Δ11,558 bp | [lsrF]–[marC] | [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1606886 | 1618443 | 11558 | 48 [0] | [0] 48 | [lsrF]–[marC] | [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1606885 | 0 (0.000) | 48 (0.950) | 45/296 | 0.3 | 100% | coding (786/876 nt) | lsrF | putative autoinducer‑2 (AI‑2) aldolase |
| ? | NC_000913 | 1618444 = | 0 (0.000) | coding (465/666 nt) | marC | UPF0056 family inner membrane protein | |||||
ATTGTTGCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGGTGGCGATGATGAAAGCCGTACAGGCGGTGGTTCACCATAACGAAACGGCTGATCGGGCATATGAACTCTATCTGAGTGAAAAACAGTAACTGCGGATCTAAGGAGAAGAATTATGCACGTCACACTGGTTGAAATTAACGTTCATGA > NC_000913/1606739‑1607033 | aTTGTTGCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacc > 2:537242‑M1/1‑147 (MQ=255) gttgCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaa < 1:698554‑M1/151‑8 (MQ=255) tgCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGGTATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatc > 2:451992‑M1/1‑142 (MQ=255) tgCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaat < 1:243546‑M1/150‑9 (MQ=255) ccGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcag < 1:461042‑M1/151‑12 (MQ=255) ggATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcg > 2:488566‑M1/1‑138 (MQ=255) gATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcg > 1:479977‑M1/1‑137 (MQ=255) tGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcga > 2:769467‑M1/1‑135 (MQ=255) ccGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggtt < 2:427743‑M1/151‑20 (MQ=255) ccATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactct > 1:209247‑M1/1‑125 (MQ=255) ccATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactct > 1:5342‑M1/1‑125 (MQ=255) aTTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcact > 2:349133‑M1/1‑117 (MQ=255) gCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgt < 2:80675‑M1/150‑37 (MQ=255) tGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtgg > 1:209367‑M1/1‑112 (MQ=255) ggTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgc < 2:220417‑M1/150‑43 (MQ=255) aaaTTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagcta < 2:9377‑M1/151‑50 (MQ=255) aaTTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaa < 2:482852‑M1/151‑51 (MQ=255) aaTTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagcta > 2:240008‑M1/1‑101 (MQ=255) cGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatc > 2:388788‑M1/1‑95 (MQ=255) gAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcata < 1:676123‑M1/151‑59 (MQ=255) gcgcGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgc < 2:72358‑M1/151‑61 (MQ=255) gAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctat < 2:699898‑M1/150‑64 (MQ=255) ggCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatgg > 1:151373‑M1/1‑85 (MQ=255) gcTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcc > 2:121999‑M1/1‑82 (MQ=255) ggAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccg < 1:270578‑M1/150‑72 (MQ=255) ggAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttccc < 1:51981‑M1/149‑71 (MQ=255) gAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGCGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccgg > 1:713669‑M1/1‑78 (MQ=255) aTGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccg < 1:192516‑M1/151‑77 (MQ=255) gCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTATCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggc > 2:769575‑M1/1‑71 (MQ=255) gCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggc < 2:75291‑M1/151‑89 (MQ=255) aTCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcatt > 1:70176‑M1/1‑60 (MQ=255) tCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcatt < 2:270399‑M1/150‑92 (MQ=255) gATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgcc > 1:723846‑M1/1‑57 (MQ=255) gATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgcc > 1:201494‑M1/1‑57 (MQ=255) aTCAGGGCGCTTCTGGCGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgcc > 1:589754‑M1/1‑56 (MQ=255) gcgcTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggca < 1:257096‑M1/151‑102 (MQ=255) ggTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaag < 1:69241‑M1/148‑107 (MQ=255) tgtgGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaat > 2:377907‑M1/1‑40 (MQ=255) atatGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattgg < 1:412868‑M1/151‑117 (MQ=255) gTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggtt < 1:267927‑M1/151‑126 (MQ=255) atTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatct > 2:581002‑M1/1‑21 (MQ=255) atTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatct < 1:168351‑M1/151‑131 (MQ=255) ttCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttc < 1:704465‑M1/150‑133 (MQ=255) tCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttcc < 1:83049‑M1/150‑134 (MQ=255) cAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagc > 2:283470‑M1/1‑15 (MQ=255) cTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctctt > 1:131012‑M1/1‑11 (MQ=255) cATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgac < 2:158068‑M1/151‑146 (MQ=255) ccGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttg < 2:204295‑M1/151‑149 (MQ=255) | ATTGTTGCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGGTGGCGATGATGAAAGCCGTACAGGCGGTGGTTCACCATAACGAAACGGCTGATCGGGCATATGAACTCTATCTGAGTGAAAAACAGTAACTGCGGATCTAAGGAGAAGAATTATGCACGTCACACTGGTTGAAATTAACGTTCATGA > NC_000913/1606739‑1607033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |