| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,606,886 | Δ11,558 bp | [lsrF]–[marC] | [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1606886 | 1618443 | 11558 | 48 [0] | [0] 48 | [lsrF]–[marC] | [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1606885 | 0 (0.000) | 48 (0.950) | 45/296 | 0.3 | 100% | coding (786/876 nt) | lsrF | putative autoinducer‑2 (AI‑2) aldolase |
| ? | NC_000913 | 1618444 = | 0 (0.000) | coding (465/666 nt) | marC | UPF0056 family inner membrane protein | |||||
CATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACTTG > NC_000913/1618297‑1618591 | attgttgccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTAcc > 2:537242‑M2/148‑151 (MQ=255) gttgccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCaa < 1:698554‑M2/7‑1 (MQ=255) tgccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtgggtatggggcgtaatattttccagtctgaccatccgTACCCAATc > 2:451992‑M2/143‑151 (MQ=255) tgccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAAt < 1:243546‑M2/8‑1 (MQ=255) ccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAg < 1:461042‑M2/11‑1 (MQ=255) ggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCg > 2:488566‑M2/139‑151 (MQ=255) gatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCg > 1:479977‑M2/138‑150 (MQ=255) tgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGa > 2:769467‑M2/136‑149 (MQ=255) ccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGtt < 2:427743‑M2/19‑1 (MQ=255) ccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAActct > 1:209247‑M2/126‑151 (MQ=255) ccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAActct > 1:5342‑M2/126‑151 (MQ=255) attgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACt > 2:349133‑M2/118‑151 (MQ=255) gctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACtgt < 2:80675‑M2/36‑1 (MQ=255) tggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTgg > 1:209367‑M2/113‑150 (MQ=255) ggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGc < 2:220417‑M2/42‑1 (MQ=255) aaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCta < 2:9377‑M2/49‑1 (MQ=255) aattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCtaa < 2:482852‑M2/50‑1 (MQ=255) aattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCta > 2:240008‑M2/102‑150 (MQ=255) cggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAatc > 2:388788‑M2/96‑150 (MQ=255) gagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATaatcata < 1:676123‑M2/58‑2 (MQ=255) gcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGc < 2:72358‑M2/60‑1 (MQ=255) gaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTAt < 2:699898‑M2/63‑1 (MQ=255) ggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATgg > 1:151373‑M2/86‑150 (MQ=255) gctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTcc > 2:121999‑M2/83‑151 (MQ=255) ggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTccc < 1:51981‑M2/70‑1 (MQ=255) ggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCg < 1:270578‑M2/71‑1 (MQ=255) gaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggcgcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCgg > 1:713669‑M2/79‑150 (MQ=255) atgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCg < 1:192516‑M2/76‑1 (MQ=255) gctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattatccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGc > 2:769575‑M2/72‑149 (MQ=255) gctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGc < 2:75291‑M2/88‑1 (MQ=255) atcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCAtt > 1:70176‑M2/61‑151 (MQ=255) tcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCAtt < 2:270399‑M2/91‑1 (MQ=255) gatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGcc > 1:723846‑M2/58‑151 (MQ=255) gatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGcc > 1:201494‑M2/58‑151 (MQ=255) atcagggcgcttctggcgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGcc > 1:589754‑M2/57‑150 (MQ=255) gcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGca < 1:257096‑M2/101‑1 (MQ=255) ggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAg < 1:69241‑M2/106‑1 (MQ=255) tgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAat > 2:377907‑M2/41‑151 (MQ=255) atatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTgg < 1:412868‑M2/116‑1 (MQ=255) gtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGtt < 1:267927‑M2/125‑1 (MQ=255) attttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCt > 2:581002‑M2/22‑151 (MQ=255) attttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCt < 1:168351‑M2/130‑1 (MQ=255) ttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTc < 1:704465‑M2/132‑1 (MQ=255) tccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTcc < 1:83049‑M2/133‑1 (MQ=255) cagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGc > 2:283470‑M2/16‑151 (MQ=255) ctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCtt > 1:131012‑M2/12‑151 (MQ=255) catccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGAc < 2:158068‑M2/145‑1 (MQ=255) ccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACTTg < 2:204295‑M2/148‑1 (MQ=255) | CATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACTTG > NC_000913/1618297‑1618591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |