| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,606,886 | Δ11,558 bp | [lsrF]–[marC] | [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1606886 | 1618443 | 11558 | 40 [0] | [0] 40 | [lsrF]–[marC] | [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1606885 | 0 (0.000) | 40 (0.840) | 37/296 | 0.5 | 100% | coding (786/876 nt) | lsrF | putative autoinducer‑2 (AI‑2) aldolase |
| ? | NC_000913 | 1618444 = | 0 (0.000) | coding (465/666 nt) | marC | UPF0056 family inner membrane protein | |||||
GGATTGTTGCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGGTGGCGATGATGAAAGCCGTACAGGCGGTGGTTCACCATAACGAAACGGCTGATCGGGCATATGAACTCTATCTGAGTGAAAAACAGTAACTGCGGATCTAAGGAGAAGAATTATGCACGTCACACTGGTTGAAATTAACGTTCATGAA > NC_000913/1606737‑1607034 | ggATTGTTGCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGta < 1:281510‑M1/151‑3 (MQ=255) cGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagc < 1:486057‑M1/151‑13 (MQ=255) cGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttg > 2:471115‑M1/1‑131 (MQ=255) ggTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttga < 1:426747‑M1/151‑22 (MQ=255) aTTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctga < 2:238040‑M1/151‑29 (MQ=255) tGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgac < 1:670675‑M1/150‑30 (MQ=255) aTTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcact > 2:115862‑M1/1‑117 (MQ=255) tGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactg < 2:187846‑M1/150‑36 (MQ=255) ggCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggac < 2:76486‑M1/151‑41 (MQ=255) cGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgc > 1:192337‑M1/1‑109 (MQ=255) gTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccg > 2:63895‑M1/1‑107 (MQ=255) aaaaaTTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagc < 2:499291‑M1/151‑48 (MQ=255) aaaaTTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagct > 1:604808‑M1/1‑103 (MQ=255) aaaTTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagcta < 1:168201‑M1/151‑50 (MQ=255) aaTTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagcta > 2:647789‑M1/1‑101 (MQ=255) ccGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatc < 1:426928‑M1/151‑56 (MQ=255) ccGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatc < 2:386342‑M1/151‑56 (MQ=255) cGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatca < 2:69083‑M1/151‑57 (MQ=255) ggAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcat > 2:68421‑M1/1‑94 (MQ=255) gAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatc < 1:250551‑M1/151‑59 (MQ=255) gAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatg > 2:159647‑M1/1‑87 (MQ=255) gAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatg > 2:328897‑M1/1‑87 (MQ=255) ggCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagt < 2:560533‑M1/149‑82 (MQ=255) gCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggc < 1:622664‑M1/151‑89 (MQ=255) aTCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcatt < 1:406218‑M1/151‑92 (MQ=255) aTCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggca < 2:19025‑M1/149‑90 (MQ=255) gggCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcgg > 2:133237‑M1/1‑52 (MQ=255) gcgcTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggca < 1:443608‑M1/151‑102 (MQ=255) tgGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatat > 2:561407‑M1/1‑38 (MQ=255) gCGTAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactggg > 2:496263‑M1/1‑28 (MQ=255) tAATATTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttc > 2:511706‑M1/1‑25 (MQ=255) atTTTCCAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatc < 2:475919‑M1/150‑130 (MQ=255) tCCAGTCTGCCCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatctt < 2:671901‑M1/148‑132 (MQ=255) ccAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttcca < 1:675874‑M1/150‑135 (MQ=255) ccAGTCTGACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttcca < 1:515379‑M1/150‑135 (MQ=255) gACCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttcc < 2:331339‑M1/151‑143 (MQ=255) aCCATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccg < 1:86964‑M1/151‑144 (MQ=255) ccATCCGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccga < 2:421414‑M1/151‑145 (MQ=255) ccGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgactt < 1:86336‑M1/150‑148 (MQ=255) cGtacccaatcagcgaaggttgaactctgacgcactgtggacgccgagctaataatcatcgctatggttcccggaccggcagtacttggcattgccagcggcacaaaggcaatattggcactgggttcatcttccagctcttccgacttgc > 2:637905‑M1/1‑2 (MQ=255) | GGATTGTTGCCGGATGTCCGGTACCCATTGTTATTGCTGGCGGTAAAAAATTACCGGAGCGCGAGGCGCTGGAAATGTGCTGGCAGGCTATCGATCAGGGCGCTTCTGGTGTGGATATGGGGCGTAATATTTTCCAGTCTGACCATCCGGTGGCGATGATGAAAGCCGTACAGGCGGTGGTTCACCATAACGAAACGGCTGATCGGGCATATGAACTCTATCTGAGTGAAAAACAGTAACTGCGGATCTAAGGAGAAGAATTATGCACGTCACACTGGTTGAAATTAACGTTCATGAA > NC_000913/1606737‑1607034 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |