Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,606,886 Δ11,558 bp [lsrF][marC] [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1606886 1618443 11558 40 [0] [0] 40 [lsrF]–[marC] [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16068850 (0.000)40 (0.840) 37/296 0.5 100% coding (786/876 nt) lsrF putative autoinducer‑2 (AI‑2) aldolase
?NC_000913 1618444 = 0 (0.000)coding (465/666 nt) marC UPF0056 family inner membrane protein

CCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACTTGC  >  NC_000913/1618295‑1618592
                                                                                                                                                     |                                                                                                                                                    
ggattgttgccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTa                                                                                                                                                     <  1:281510‑M2/2‑1 (MQ=255)
          cggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGc                                                                                                                                           <  1:486057‑M2/12‑1 (MQ=255)
                  cggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTg                                                                                                                                   >  2:471115‑M2/132‑151 (MQ=255)
                   ggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGa                                                                                                                                  <  1:426747‑M2/21‑1 (MQ=255)
                          attgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGa                                                                                                                           <  2:238040‑M2/28‑1 (MQ=255)
                            tgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGAc                                                                                                                          <  1:670675‑M2/29‑1 (MQ=255)
                                attgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACt                                                                                                                     >  2:115862‑M2/118‑151 (MQ=255)
                                  tgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACtg                                                                                                                    <  2:187846‑M2/35‑1 (MQ=255)
                                      ggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGAc                                                                                                               <  2:76486‑M2/40‑1 (MQ=255)
                                        cggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGc                                                                                                             >  1:192337‑M2/110‑151 (MQ=255)
                                          gtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCg                                                                                                           >  2:63895‑M2/108‑151 (MQ=255)
                                             aaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGc                                                                                                        <  2:499291‑M2/47‑1 (MQ=255)
                                              aaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCt                                                                                                       >  1:604808‑M2/104‑151 (MQ=255)
                                               aaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCta                                                                                                      <  1:168201‑M2/49‑1 (MQ=255)
                                                aattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCta                                                                                                      >  2:647789‑M2/102‑150 (MQ=255)
                                                     ccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAatc                                                                                                <  1:426928‑M2/55‑1 (MQ=255)
                                                     ccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAatc                                                                                                <  2:386342‑M2/55‑1 (MQ=255)
                                                      cggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAatca                                                                                               <  2:69083‑M2/56‑1 (MQ=255)
                                                       ggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAatcat                                                                                              >  2:68421‑M2/95‑151 (MQ=255)
                                                        gagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAatcatc                                                                                             <  1:250551‑M2/58‑1 (MQ=255)
                                                              gaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATg                                                                                       >  2:159647‑M2/88‑151 (MQ=255)
                                                              gaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATg                                                                                       >  2:328897‑M2/88‑151 (MQ=255)
                                                                                 ggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGt                                                                      <  2:560533‑M2/81‑1 (MQ=255)
                                                                                      gctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGc                                                               <  1:622664‑M2/88‑1 (MQ=255)
                                                                                         atcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCa                                                              <  2:19025‑M2/89‑1 (MQ=255)
                                                                                         atcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCAtt                                                            <  1:406218‑M2/91‑1 (MQ=255)
                                                                                                 gggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCgg                                                    >  2:133237‑M2/53‑151 (MQ=255)
                                                                                                   gcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGca                                                  <  1:443608‑M2/101‑1 (MQ=255)
                                                                                                               tggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAatat                                      >  2:561407‑M2/39‑151 (MQ=255)
                                                                                                                         gcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTggg                            >  2:496263‑M2/29‑151 (MQ=255)
                                                                                                                            taatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTc                         >  2:511706‑M2/26‑151 (MQ=255)
                                                                                                                                attttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATc                      <  2:475919‑M2/129‑1 (MQ=255)
                                                                                                                                    tccagtctgcccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCtt                    <  2:671901‑M2/131‑1 (MQ=255)
                                                                                                                                     ccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCa                 <  1:675874‑M2/134‑1 (MQ=255)
                                                                                                                                     ccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCa                 <  1:515379‑M2/134‑1 (MQ=255)
                                                                                                                                            gaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTcc         <  2:331339‑M2/142‑1 (MQ=255)
                                                                                                                                             accatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCg        <  1:86964‑M2/143‑1 (MQ=255)
                                                                                                                                              ccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGa       <  2:421414‑M2/144‑1 (MQ=255)
                                                                                                                                                  ccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACtt    <  1:86336‑M2/147‑1 (MQ=255)
                                                                                                                                                   cgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACTTGc  >  2:637905‑M2/3‑151 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
CCCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACTTGC  >  NC_000913/1618295‑1618592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: