mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 343 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 226,262 | 0 | A | T | 78.6% | 78.5 / 136.2 | 201 | noncoding (504/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,278 | 0 | G | A | 78.1% | 78.1 / 138.8 | 215 | noncoding (520/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,309 | 0 | G | A | 76.9% | 68.5 / 150.2 | 238 | noncoding (551/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,310 | 0 | T | G | 76.9% | 63.0 / 170.6 | 238 | noncoding (552/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,280 | 0 | A | G | 76.7% | 67.9 / 139.7 | 216 | noncoding (522/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,308 | 0 | C | T | 76.6% | 61.8 / 159.9 | 239 | noncoding (550/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,305 | 0 | A | . | 76.2% | 46.4 / 302.9 | 240 | noncoding (547/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,301 | 0 | G | A | 76.2% | 52.0 / 174.8 | 244 | noncoding (543/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,307 | 0 | G | T | 76.0% | 55.4 / 186.5 | 240 | noncoding (549/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,299 | 0 | A | C | 75.7% | 50.9 / 179.6 | 243 | noncoding (541/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 4,038,807 | 0 | C | A | 75.0% | 20.8 / 49.1 | 60 | noncoding (1289/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,809 | 0 | G | C | 75.0% | 21.2 / 49.6 | 60 | noncoding (1291/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,811 | 0 | T | A | 75.0% | 19.2 / 45.3 | 60 | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,781 | 0 | A | G | 74.4% | 24.2 / 61.1 | 90 | noncoding (1263/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 226,248 | 0 | C | A | 74.3% | 41.3 / 127.3 | 150 | noncoding (490/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 4,038,817 | 0 | G | A | 74.1% | 18.2 / 40.4 | 58 | noncoding (1299/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,741 | 0 | T | A | 73.6% | 60.8 / 110.9 | 129 | noncoding (1223/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,744 | 0 | G | A | 73.6% | 54.4 / 101.8 | 129 | noncoding (1226/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,747 | 0 | A | T | 73.6% | 58.5 / 108.2 | 129 | noncoding (1229/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,790 | 0 | T | C | 72.6% | 24.6 / 53.9 | 73 | noncoding (1272/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 49 (0.900) | 5 (0.100) | 5/266 | 8.3 | 10.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 43 (0.890) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 47 (0.860) | 5 (0.100) | 5/266 | 8.3 | 10.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 43 (0.890) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4542682 = | 56 (1.030) | 3 (0.060) | 3/280 | 10.1 | 4.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 63 (1.230) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||