| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 4,119,238 | Δ18 bp | coding (76‑93/486 nt) | rraA ← | ribonuclease E (RNase E) inhibitor protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4119237 | 2 (0.030) | 56 (0.940) | 52/278 | 0.3 | 96.7% | coding (94/486 nt) | rraA | ribonuclease E (RNase E) inhibitor protein |
| ? | NC_000913 | 4119256 = | 2 (0.030) | coding (75/486 nt) | rraA | ribonuclease E (RNase E) inhibitor protein | |||||
CCAGTTCAGCATCGACCAGTGCGCGACGAACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAACGACGCCCGTCCGCCAAAGTTGGAGAACAGCGGTTCCACGACGTTAACATCTTCTTGATAGATGTCACAAAGCTCGGAAGTATCGTATTTCATAGGCTTAACATTCAGTTGCTGCGAGAATTTTCAGTATATCGCGCTATGTGGGCTGT > NC_000913/4119096‑4119386 | ccAGTTCAGCATCGACCAGTGCGCGACGAACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggaga < 2:503789‑M1/150‑9 (MQ=255) cAGTTCAGCATCGACCAGTGCGCGACGAACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaac < 1:190182‑M1/151‑11 (MQ=255) tCAGCATCGACCAGTGCGCGACGAACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcg > 1:228524‑M1/1‑137 (MQ=255) tCAGCATCGACCAGTGCGCGACGAACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagc < 2:12711‑M1/150‑14 (MQ=255) aGCATCGACCAGTGCGCGACGAACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcg > 1:124768‑M1/1‑135 (MQ=255) aTCGACCAGTGCGCGACGAACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttcc > 2:744502‑M1/1‑132 (MQ=255) aCCAGTGCGCGACGAACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGCAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacg > 2:917925‑M1/1‑128 (MQ=255) gTGCGCGACGAACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgtt < 1:132928‑M1/151‑28 (MQ=255) acgaACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatct < 1:424676‑M1/151‑35 (MQ=255) cgaACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatctt > 2:731748‑M1/1‑116 (MQ=255) aaCAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttct < 2:478565‑M1/151‑38 (MQ=255) cAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttg < 2:958299‑M1/151‑40 (MQ=255) aGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttg > 1:250248‑M1/1‑111 (MQ=255) aGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttg > 1:577018‑M1/1‑111 (MQ=255) accGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatg > 2:427596‑M1/1‑105 (MQ=255) gCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtca < 2:314306‑M1/151‑50 (MQ=255) cATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcaca < 1:460351‑M1/151‑52 (MQ=255) cATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcac > 1:246803‑M1/1‑100 (MQ=255) cgacgaCAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaag < 1:344381‑M1/151‑55 (MQ=255) gacgacAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagc < 2:680844‑M1/151‑56 (MQ=255) acacGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAACGACGCCCGTCCGCCAAAGTTGGAGAACAGCGGTTCCACGACGTTAACATCTTCTTGATAGATGt > 2:834414/1‑151 (MQ=255) acGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcg < 2:464243‑M1/151‑68 (MQ=255) cACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtattt < 2:439848‑M1/151‑73 (MQ=255) ggCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcat < 1:865831‑M1/151‑76 (MQ=255) ccATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcat > 1:909045‑M1/1‑74 (MQ=255) gTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaac > 2:951787‑M1/1‑67 (MQ=255) gTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggctta < 1:764271‑M1/149‑83 (MQ=255) cGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacatt < 1:457801‑M1/151‑88 (MQ=255) cGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacat < 1:951910‑M1/150‑87 (MQ=255) aGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagtt < 2:205273‑M1/151‑93 (MQ=255) tCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgct > 1:183025‑M1/1‑56 (MQ=255) gTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgc < 1:190033‑M1/151‑98 (MQ=255) gTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgc < 1:52027‑M1/151‑98 (MQ=255) cAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgag < 2:228503‑M1/151‑101 (MQ=255) aCCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattt < 1:185745‑M1/151‑106 (MQ=255) ttGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagt > 1:682053‑M1/1‑41 (MQ=255) gTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagta < 1:788985‑M1/150‑112 (MQ=255) cGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgc > 2:735795‑M1/1‑34 (MQ=255) cGAAACATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcg < 2:223580‑M1/150‑117 (MQ=255) aaCATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgct > 1:811479‑M1/1‑31 (MQ=255) aaCATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgct > 2:563511‑M1/1‑31 (MQ=255) aCATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgcta < 2:160471‑M1/151‑122 (MQ=255) aCATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgct > 2:312703‑M1/1‑30 (MQ=255) cATTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctat < 2:885633‑M1/151‑123 (MQ=255) aTTTTACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatg > 1:224216‑M1/1‑28 (MQ=255) ttttACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgt > 2:750163‑M1/1‑27 (MQ=255) tttACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtg > 1:29160‑M1/1‑26 (MQ=255) ttACCGTGATTATTTGTCCGCCAAACGACGCCCGTCCGCCAAAGTTGGAGAACAGCGGTTCCACGACGTTAACATCTTCTTGATAGATGTCACAAAGCTCGGAAGTATCGTATTTCATAGGCTTAACATTCAGTTGCTGCGAGAATTTTc < 1:266817/150‑1 (MQ=255) tACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtggg > 1:509920‑M1/1‑24 (MQ=255) tACCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgt > 2:256703‑M1/1‑24 (MQ=255) aCCGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggc > 1:298941‑M1/1‑23 (MQ=255) ccGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggct > 1:821830‑M1/1‑22 (MQ=255) cGTGATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggctg < 2:621724‑M1/151‑131 (MQ=255) gATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggctgttg < 1:199530‑M1/151‑134 (MQ=255) gATTATTTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggctgtt < 2:912580‑M1/150‑133 (MQ=255) ttattTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggctgttggc > 1:106808‑M1/1‑16 (MQ=255) tattTGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggctgttggc > 2:685493‑M1/1‑15 (MQ=255) ttGTCCGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggctgttggcaaa < 1:239318‑M1/150‑139 (MQ=255) cGCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggctgttggcaaaatcatc > 1:764624‑M1/1‑7 (MQ=255) gCCAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggctgttggcaaaatcatca < 2:662946‑M1/151‑146 (MQ=255) ccAAAgttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggctgttggcaaaatcatcaa < 1:386539‑M1/151‑147 (MQ=255) aagttggagaacagcggttccacgacgttaacatcttcttgatagatgtcacaaagctcggaagtatcgtatttcataggcttaacattcagttgctgcgagaattttcagtatatcgcgctatgtgggctgttggcaaaatcatcaattg > 1:258046‑M1/1‑2 (MQ=255) | CCAGTTCAGCATCGACCAGTGCGCGACGAACAGAACCACCGCCATCGACGACAAGAACACGACCACGGCCATTCTGTTCGAGCAGATCGTACAGCAACCCGTTGTCCTCGAAACATTTTACCGTGATTATTTGTCCGCCAAACGACGCCCGTCCGCCAAAGTTGGAGAACAGCGGTTCCACGACGTTAACATCTTCTTGATAGATGTCACAAAGCTCGGAAGTATCGTATTTCATAGGCTTAACATTCAGTTGCTGCGAGAATTTTCAGTATATCGCGCTATGTGGGCTGT > NC_000913/4119096‑4119386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |