| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,867,359 | Δ9 bp | coding (185‑193/993 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2867359 | 2867367 | 9 | 51 [0] | [0] 50 | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2867358 | 0 (0.000) | 50 (0.880) | 47/288 | 0.4 | 100% | coding (194/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| ? | NC_000913 | 2867368 = | 0 (0.000) | coding (184/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
CCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTCAACTCCGTTC > NC_000913/2867214‑2867495 | ccACGATTGCCATAACGGCGGGGAATTTTTACCAACAGACGCAAATTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGGGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAAACAAgggaa > 2:503096‑M1/1‑145 (MQ=255)ccACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaa < 2:181286‑M1/151‑7 (MQ=255) tGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgag < 1:751988‑M1/150‑13 (MQ=255) gCCATAACGGCGGGCAATTTTTAACACCAGACGCAAGTTACTCTCGATCCTCCGGCGGCGAGAGGCGACATCTCCCCGCAGTGCGCGACGCGCAAAATAAAATTCTTCTTCGGCCGTTAACAGGGGGGAATAAACaaggtaaagctgag > 2:770390/1‑137 (MQ=255) aTAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcg < 1:86164‑M1/151‑18 (MQ=255) gCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacac > 1:648002‑M1/1‑124 (MQ=255) cAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacg < 2:573634‑M1/151‑29 (MQ=255) cAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacg > 1:283566‑M1/1‑123 (MQ=255) aTTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgct > 2:626796‑M1/1‑121 (MQ=255) tttttACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctg > 1:68235‑M1/1‑120 (MQ=255) tttttACCAACAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGGGAATAACCAAggtaaagctgagtcgcgtccaacacacgct > 1:253833‑M1/1‑120 (MQ=255) caGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccc > 1:400435‑M1/1‑110 (MQ=255) aGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccct < 2:652023‑M1/151‑43 (MQ=255) aGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataa < 1:71576‑M1/151‑50 (MQ=255) gTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataac > 2:873350‑M1/1‑101 (MQ=255) tACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataaca < 2:685863‑M1/150‑52 (MQ=255) aCTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacag < 2:178088‑M1/150‑53 (MQ=255) ctcGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagtt < 2:684333‑M1/149‑55 (MQ=255) cGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctc < 2:330078‑M1/151‑59 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttc > 2:280556‑M1/1‑90 (MQ=255) catcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttc < 1:800292‑M1/150‑62 (MQ=255) tcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggc > 1:543008‑M1/1‑87 (MQ=255) ggcggcGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggcca < 2:172875‑M1/150‑67 (MQ=255) gcggcgAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCTTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaa > 1:503021‑M1/1‑83 (MQ=255) ggcgAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatc > 1:100404‑M1/1‑81 (MQ=255) gagaGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgtt > 1:513092‑M1/1‑78 (MQ=255) agagGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgtt > 2:211777‑M1/1‑77 (MQ=255) gACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactg < 2:631621‑M1/151‑81 (MQ=255) tctcCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggtt > 1:374634‑M1/1‑67 (MQ=255) ccACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggtt < 1:126836‑M1/148‑85 (MQ=255) ccACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggtt < 1:443095‑M1/148‑85 (MQ=255) gCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttc > 1:605677‑M1/1‑60 (MQ=255) gCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgtt > 1:852826‑M1/1‑60 (MQ=255) cAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttct < 1:56226‑M1/151‑93 (MQ=255) gTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctac < 2:584039‑M1/151‑95 (MQ=255) cgcgACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaa < 2:297034‑M1/151‑98 (MQ=255) gACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggc > 2:170905‑M1/1‑51 (MQ=255) aCGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggc > 1:516660‑M1/1‑50 (MQ=255) gcgcAAAATAAACTTCTACTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggcct < 2:99242‑M1/150‑103 (MQ=255) cAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggccttttc < 2:797866‑M1/151‑107 (MQ=255) aTAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggccttttcgtc > 1:264747‑M1/1‑41 (MQ=255) aCTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaa > 1:893093‑M1/1‑37 (MQ=255) ttcttcttcGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacc > 2:85684‑M1/1‑35 (MQ=255) tcttcGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctca > 1:753320‑M1/1‑31 (MQ=255) cttcGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaac > 1:914815‑M1/1‑30 (MQ=255) tcGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaact < 1:512681‑M1/150‑123 (MQ=255) cGGCCGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactc < 1:728915‑M1/150‑124 (MQ=255) cGTTAACAGTGGTGAATAACCAAggtaaagctgagtcgcttccaacacacgctgtgtggctccctgcgataacagttcctcgtcggccaaatcgttatcactgggttcctggtctactaatgccttttcgtcaaaaacctcaactccgtt < 2:19343‑M1/150‑128 (MQ=255) aGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaa < 2:612740‑M1/151‑136 (MQ=255) aGTGGTGAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatca > 1:699959‑M1/1‑16 (MQ=255) tggtgAATAACCAAggtaaagctgagtcgcgtccaacacacgctgtgtggctccctgcgataacagttcctcttcggccaaatcgttatcactgggttcctgttctactaaggccttttcgtcaaaaacctcaactccgttctcatcaaat > 2:402211‑M1/1‑14 (MQ=255) | CCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTCAACTCCGTTC > NC_000913/2867214‑2867495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |