| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,867,359 | Δ9 bp | coding (185‑193/993 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2867359 | 2867367 | 9 | 51 [0] | [0] 50 | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2867358 | 0 (0.000) | 50 (0.880) | 47/288 | 0.4 | 100% | coding (194/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| ? | NC_000913 | 2867368 = | 0 (0.000) | coding (184/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
CCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTCAACTCCGTTCTCATCAAAT > NC_000913/2867223‑2867504 | ccacgattgccataacggcggggaatttttaccaacagacgcaaattactctcgatcatccggcggcgagaggcgacatctccacgcagggcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaacaaGGGaa > 2:503096‑M2/146‑150 (MQ=255)ccacgattgccataacggcgggcaatttttaccaccagacgcaagttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTaaa < 2:181286‑M2/6‑1 (MQ=255) tgccataacggcgggcaatttttaccaccagacgcaagttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAg < 1:751988‑M2/12‑1 (MQ=255) ataacggcgggcaatttttaccaccagacgcaagttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTcgcg < 1:86164‑M2/17‑1 (MQ=255) gcaatttttaccaccagacgcaagttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAacacac > 1:648002‑M2/125‑151 (MQ=255) caatttttaccaccagacgcaagttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACg < 2:573634‑M2/28‑1 (MQ=255) caatttttaccaccagacgcaagttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACg > 1:283566‑M2/124‑151 (MQ=255) atttttaccaccagacgcaagttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCt > 2:626796‑M2/122‑151 (MQ=255) tttttaccaccagacgcaagttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCtg > 1:68235‑M2/121‑151 (MQ=255) tttttaccaacagacgcaagttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggggaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCt > 1:253833‑M2/121‑150 (MQ=255) cagacgcaagttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTccc > 1:400435‑M2/111‑151 (MQ=255) agacgcaagttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCt < 2:652023‑M2/42‑1 (MQ=255) agttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATaa < 1:71576‑M2/49‑1 (MQ=255) gttactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAAc > 2:873350‑M2/102‑151 (MQ=255) tactctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACa < 2:685863‑M2/51‑1 (MQ=255) actctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAg < 2:178088‑M2/52‑1 (MQ=255) ctcgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGtt < 2:684333‑M2/54‑1 (MQ=255) cgatcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCctc < 2:330078‑M2/58‑1 (MQ=255) tcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTc > 2:280556‑M2/91‑151 (MQ=255) catccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTc < 1:800292‑M2/61‑1 (MQ=255) tccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGc > 1:543008‑M2/88‑151 (MQ=255) ggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCa < 2:172875‑M2/66‑1 (MQ=255) gcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggcctttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCaa > 1:503021‑M2/84‑150 (MQ=255) ggcgagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATc > 1:100404‑M2/82‑151 (MQ=255) gagaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGtt > 1:513092‑M2/79‑151 (MQ=255) agaggcgacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGtt > 2:211777‑M2/78‑150 (MQ=255) gacatctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTg < 2:631621‑M2/80‑1 (MQ=255) tctccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGtt > 1:374634‑M2/68‑151 (MQ=255) ccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGtt < 1:126836‑M2/84‑1 (MQ=255) ccacgcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGtt < 1:443095‑M2/84‑1 (MQ=255) gcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGtt > 1:852826‑M2/61‑150 (MQ=255) gcagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTc > 1:605677‑M2/61‑151 (MQ=255) cagtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTct < 1:56226‑M2/92‑1 (MQ=255) gtgcgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTctac < 2:584039‑M2/94‑1 (MQ=255) cgcgacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTaa < 2:297034‑M2/97‑1 (MQ=255) gacgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGc > 2:170905‑M2/52‑151 (MQ=255) acgcgcaaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGc > 1:516660‑M2/51‑150 (MQ=255) gcgcaaaataaacttctacttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCt < 2:99242‑M2/102‑1 (MQ=255) caaaataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTc < 2:797866‑M2/106‑1 (MQ=255) ataaacttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTc > 1:264747‑M2/42‑150 (MQ=255) acttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCaaaa > 1:893093‑M2/38‑150 (MQ=255) ttcttcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAAcc > 2:85684‑M2/36‑151 (MQ=255) tcttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTCa > 1:753320‑M2/32‑150 (MQ=255) cttcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTCAAc > 1:914815‑M2/31‑151 (MQ=255) tcggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTCAACt < 1:512681‑M2/122‑1 (MQ=255) cggccgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTCAACTc < 1:728915‑M2/123‑1 (MQ=255) cgttaacagtggtgaataaccaaGGTAAAGCTGAGTCGCTTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCGTCGGCCAAATCGTTATCACTGGGTTCCTGGTCTACTAATGCCTTTTCGTCAAAAACCTCAACTCCGtt < 2:19343‑M2/127‑1 (MQ=255) agtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTCAACTCCGTTCtcatca > 1:699959‑M2/17‑150 (MQ=255) agtggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTCAACTCCGTTCTCATCaa < 2:612740‑M2/135‑1 (MQ=255) tggtgaataaccaaGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTCAACTCCGTTCTCATCAAAt > 2:402211‑M2/15‑151 (MQ=255) | CCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGATAACAGTTCCTCTTCGGCCAAATCGTTATCACTGGGTTCCTGTTCTACTAAGGCCTTTTCGTCAAAAACCTCAACTCCGTTCTCATCAAAT > NC_000913/2867223‑2867504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |