| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,911,491 | Δ7,528 bp | [relA]–[gudD] | [relA], rlmD, barA, [gudD] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2911491 | 2919018 | 7528 | 54 [0] | [0] 53 | [relA]–[gudD] | [relA], rlmD, barA, [gudD] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2911490 | 0 (0.000) | 50 (0.830) | 46/280 | 0.5 | 100% | coding (2162/2235 nt) | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| ? | NC_000913 | 2919019 = | 0 (0.000) | coding (367/1341 nt) | gudD | D‑glucarate dehydratase 1 | |||||
ACCCTTTCCTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCACTTGCAGGTTGTAAATCTCAATGGTCATGTCGATGGTCGCCAGTTGCTGTTTGGTGTCGCTACGGCTGGCAACGCCAAGCACGTTCACCTTCTCGTTGGCGAGAATGGTCGTGATATCACGTAACAACCCACTACGATCATTAGCTA > NC_000913/2911341‑2911637 | aCCCTTTCCTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAg < 2:21388‑M1/151‑2 (MQ=255) tttCCTCAAACCGCTTTCATATGTAGCTCCAGTATATATCAATCTACATTGTAGACACGCGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCCCGTCGATAACATCAGGCACCTGGATGAGTTTACACAGCACGCGCCccaccagaacc > 2:820602/1‑146 (MQ=255) ccTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccag < 2:239909‑M1/150‑8 (MQ=255) tCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcat > 1:948594‑M1/1‑141 (MQ=255) aCCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgcc > 2:219976‑M1/1‑137 (MQ=255) ccGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccg > 1:611689‑M1/1‑136 (MQ=255) cGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgc > 1:409257‑M1/1‑135 (MQ=255) gCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgct > 2:887722‑M1/1‑134 (MQ=255) tATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttc > 1:292409‑M1/1‑132 (MQ=255) aTCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttc < 2:290041‑M1/150‑20 (MQ=255) cATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctat > 1:323045‑M1/1‑129 (MQ=255) atttagaTACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCCCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatccc > 2:700550‑M1/4‑126 (MQ=255) tGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccg > 2:432279‑M1/1‑125 (MQ=255) tAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggt > 2:110191‑M1/1‑123 (MQ=255) aGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggta < 2:795219‑M1/151‑30 (MQ=255) tACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacg > 1:272118‑M1/1‑102 (MQ=255) aCATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacg < 1:519967‑M1/150‑50 (MQ=255) aCATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGACCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggta < 2:932957‑M1/148‑48 (MQ=255) aTTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgt > 2:903154‑M1/1‑99 (MQ=255) tGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggt > 1:346060‑M1/1‑97 (MQ=255) aGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaa < 1:224448‑M1/151‑58 (MQ=255) aGATACGAGCAAATTTCGGCCTAACTCCCGTACAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtatctacatgaatagtggtacgtaggtcaa < 2:885301‑M1/151‑58 (MQ=255) aCGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgt > 1:1010528‑M1/1‑90 (MQ=255) ttCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaacc > 1:409415‑M1/1‑80 (MQ=255) tCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccg < 1:587854‑M1/150‑72 (MQ=255) ggCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgc > 2:645338‑M1/1‑77 (MQ=255) ggCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgc < 2:594646‑M1/151‑75 (MQ=255) aCTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccacca < 1:588287‑M1/151‑81 (MQ=255) cGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatc > 1:706223‑M1/1‑66 (MQ=255) cGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatc < 2:48716‑M1/151‑86 (MQ=255) ccGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcg < 2:581866‑M1/151‑93 (MQ=255) gcgTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaag < 2:557649‑M1/151‑100 (MQ=255) cGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtat < 2:437801‑M1/150‑103 (MQ=255) cGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtat < 2:650166‑M1/150‑103 (MQ=255) aaCATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgctgctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgc < 1:370893‑M1/151‑108 (MQ=255) aCATCCGGCACCTGGTTGAGTTTACCCAGCGCGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccatcatcacgatcggcaaaagtattacgc < 2:450301‑M1/150‑108 (MQ=255) aCATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgca < 1:231851‑M1/151‑109 (MQ=255) cATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcac < 1:337718‑M1/151‑110 (MQ=255) aTCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcacc > 2:604692‑M1/1‑41 (MQ=255) cACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtc > 2:211265‑M1/1‑35 (MQ=255) cACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtc < 1:951357‑M1/151‑117 (MQ=255) aCCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtca < 1:761364‑M1/151‑118 (MQ=255) ccTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtc > 2:878115‑M1/1‑33 (MQ=255) ggTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcaga < 1:563926‑M1/149‑120 (MQ=255) ggTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcagcaaaagtattacgcaccagcgtcagaa < 2:225349‑M1/150‑121 (MQ=255) tGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgt < 1:471191‑M1/150‑124 (MQ=255) cAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattca < 2:524815‑M1/151‑135 (MQ=255) aCGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcaccca < 2:566092‑M1/151‑139 (MQ=255) aCGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcaccc > 1:914187‑M1/1‑13 (MQ=255) cgcgCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccag < 2:95845‑M1/151‑140 (MQ=255) cgcCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagcg < 1:511101‑M1/151‑142 (MQ=255) gcCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagaggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagcgt > 2:1019895‑M1/1‑9 (MQ=255) ccAGCAgatccagcattgccccttctatcccggtaactacatgaatagtggtacgtagatcaaatgtctgcaaaccgcgcccgccagcatcacgatcggcaaaagtattacgcagcagcgtcagaacgttattgtattcccccagcgtttt < 2:107202‑M1/151‑146 (MQ=255) agcagatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagcgttttac < 1:939070‑M1/151‑148 (MQ=255) | ACCCTTTCCTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCACTTGCAGGTTGTAAATCTCAATGGTCATGTCGATGGTCGCCAGTTGCTGTTTGGTGTCGCTACGGCTGGCAACGCCAAGCACGTTCACCTTCTCGTTGGCGAGAATGGTCGTGATATCACGTAACAACCCACTACGATCATTAGCTA > NC_000913/2911341‑2911637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |