Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,911,491 Δ7,528 bp [relA][gudD] [relA], rlmD, barA, [gudD]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2911491 2919018 7528 54 [0] [0] 53 [relA]–[gudD] [relA], rlmD, barA, [gudD]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 29114900 (0.000)50 (0.830) 46/280 0.5 100% coding (2162/2235 nt) relA (p)ppGpp synthetase I/GTP pyrophosphokinase
?NC_000913 2919019 = 0 (0.000)coding (367/1341 nt) gudD D‑glucarate dehydratase 1

CGCATGAGTCATCCGGCTGGCTTTGATACGGCAGCGGCGTGGCTTTGCGATTACCGACGAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTAC  >  NC_000913/2918869‑2919165
                                                                                                                                                      |                                                                                                                                                  
accctttcctcaaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcag                                                                                                                                                    <  2:21388‑M2/1‑1 (MQ=255)
       cctcaaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAg                                                                                                                                              <  2:239909‑M2/7‑1 (MQ=255)
         tcaaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCAt                                                                                                                                           >  1:948594‑M2/142‑151 (MQ=255)
             accgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGcc                                                                                                                                       >  2:219976‑M2/138‑151 (MQ=255)
              ccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCg                                                                                                                                      >  1:611689‑M2/137‑151 (MQ=255)
               cgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGc                                                                                                                                     >  1:409257‑M2/136‑151 (MQ=255)
                gctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCt                                                                                                                                    >  2:887722‑M2/135‑151 (MQ=255)
                  tatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTc                                                                                                                                  >  1:292409‑M2/133‑151 (MQ=255)
                   atcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTc                                                                                                                                  <  2:290041‑M2/19‑1 (MQ=255)
                     catatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTAt                                                                                                                               >  1:323045‑M2/130‑151 (MQ=255)
                        atttagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcccgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATccc                                                                                                                            >  2:700550‑M2/127‑151 (MQ=255)
                         tgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCg                                                                                                                           >  2:432279‑M2/126‑151 (MQ=255)
                           tagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGt                                                                                                                         >  2:110191‑M2/124‑151 (MQ=255)
                            agatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTa                                                                                                                        <  2:795219‑M2/29‑1 (MQ=255)
                                                tacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACg                                                                                                    >  1:272118‑M2/103‑151 (MQ=255)
                                                 acattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACg                                                                                                    <  1:519967‑M2/49‑1 (MQ=255)
                                                 acattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgacccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTa                                                                                                      <  2:932957‑M2/47‑1 (MQ=255)
                                                   attgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGt                                                                                                   >  2:903154‑M2/100‑149 (MQ=255)
                                                     tgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGt                                                                                               >  1:346060‑M2/98‑151 (MQ=255)
                                                        agatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCaa                                                                                            <  1:224448‑M2/57‑1 (MQ=255)
                                                        agatacgagcaaatttcggcctaactcccgtacaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTATCTACATGAATAGTGGTACGTAGGTCaa                                                                                            <  2:885301‑M2/57‑1 (MQ=255)
                                                            acgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGt                                                                                        >  1:1010528‑M2/91‑151 (MQ=255)
                                                                      ttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAAcc                                                                               >  1:409415‑M2/81‑150 (MQ=255)
                                                                       tcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACcg                                                                              <  1:587854‑M2/71‑1 (MQ=255)
                                                                         ggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCgcgc                                                                           >  2:645338‑M2/78‑151 (MQ=255)
                                                                         ggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCgcgc                                                                           <  2:594646‑M2/74‑1 (MQ=255)
                                                                               actcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCccacca                                                                     <  1:588287‑M2/80‑1 (MQ=255)
                                                                                    cgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATc                                                                >  1:706223‑M2/67‑151 (MQ=255)
                                                                                    cgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATc                                                                <  2:48716‑M2/85‑1 (MQ=255)
                                                                                           ccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCg                                                         <  2:581866‑M2/92‑1 (MQ=255)
                                                                                                  gcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAg                                                  <  2:557649‑M2/99‑1 (MQ=255)
                                                                                                      cgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTAt                                               <  2:437801‑M2/102‑1 (MQ=255)
                                                                                                      cgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTAt                                               <  2:650166‑M2/102‑1 (MQ=255)
                                                                                                          aacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTGCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGc                                          <  1:370893‑M2/107‑1 (MQ=255)
                                                                                                           acatccggcacctggttgagtttacccagcgcgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCATCATCACGATCGGCAAAAGTATTACGc                                          <  2:450301‑M2/107‑1 (MQ=255)
                                                                                                           acatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCa                                         <  1:231851‑M2/108‑1 (MQ=255)
                                                                                                            catccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCAc                                        <  1:337718‑M2/109‑1 (MQ=255)
                                                                                                             atccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCAcc                                       >  2:604692‑M2/42‑151 (MQ=255)
                                                                                                                   cacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTc                                 >  2:211265‑M2/36‑151 (MQ=255)
                                                                                                                   cacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTc                                 <  1:951357‑M2/116‑1 (MQ=255)
                                                                                                                    acctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCa                                <  1:761364‑M2/117‑1 (MQ=255)
                                                                                                                     cctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTc                                 >  2:878115‑M2/34‑149 (MQ=255)
                                                                                                                        ggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGa                              <  1:563926‑M2/119‑1 (MQ=255)
                                                                                                                        ggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCAGCAAAAGTATTACGCACCAGCGTCAGaa                             <  2:225349‑M2/120‑1 (MQ=255)
                                                                                                                           tgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGt                          <  1:471191‑M2/123‑1 (MQ=255)
                                                                                                                                     cagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCa               <  2:524815‑M2/134‑1 (MQ=255)
                                                                                                                                         acgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCAccc            >  1:914187‑M2/14‑150 (MQ=255)
                                                                                                                                         acgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCa           <  2:566092‑M2/138‑1 (MQ=255)
                                                                                                                                          cgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAg          <  2:95845‑M2/139‑1 (MQ=255)
                                                                                                                                            cgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCg        <  1:511101‑M2/141‑1 (MQ=255)
                                                                                                                                             gccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGAGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGt       >  2:1019895‑M2/10‑151 (MQ=255)
                                                                                                                                                ccagcaGATCCAGCATTGCCCCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGATCAAATGTCTGCAAACCGCGCCCGCCAGCATCACGATCGGCAAAAGTATTACGCAGCAGCGTCAGAACGTTATTGTATTCCCCCAGCGtttt    <  2:107202‑M2/145‑1 (MQ=255)
                                                                                                                                                  agcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTAc  <  1:939070‑M2/147‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                  
CGCATGAGTCATCCGGCTGGCTTTGATACGGCAGCGGCGTGGCTTTGCGATTACCGACGAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTAC  >  NC_000913/2918869‑2919165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: