| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,912,618 | Δ10 bp | coding (1025‑1034/2235 nt) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2912618 | 2912627 | 10 | 53 [0] | [0] 54 | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2912617 | 0 (0.000) | 53 (1.080) | 46/284 | 0.2 | 100% | coding (1035/2235 nt) | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| ? | NC_000913 | 2912628 = | 0 (0.000) | coding (1024/2235 nt) | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase | |||||
GCATTTCGCCGGAATCAGCCATCTCTTCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTTCATGCATCTGTTTGGTGCGGATTTGGATCTCAACGGTTTTTCCACCCGGCCCCAGAACCACGGTATGAATAGACTGATAACCGTTTGGTTTCGGGTTAGCGACGTAATCGTCAAACTCATCCGGCAGGTGGCGATAGTG > NC_000913/2912472‑2912757 | gCATTTCGCCGGAATCAGCCATCTCTTCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttg > 2:118220‑M1/1‑146 (MQ=255) ccGGAATCAGCCATCTCTTCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggat < 1:701054‑M1/151‑14 (MQ=255) cGGAATCAGCCATCTCTTCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatt > 1:593137‑M1/1‑137 (MQ=255) gAATCAGCCATCTCTTCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttg < 1:210779‑M1/151‑17 (MQ=255) aTCAGCCATCTCTTCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttgga < 1:749813‑M1/151‑19 (MQ=255) aTCAGCCATCTCTTCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttgg > 2:459027‑M1/1‑133 (MQ=255) aTCAGCCATCTCTTCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttcg > 1:710164‑M1/1‑133 (MQ=255) ccATCTCTTCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctca < 1:566232‑M1/151‑24 (MQ=255) tctcTTCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacg > 2:576179‑M1/1‑125 (MQ=255) tCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGGGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtt < 2:810394‑M1/149‑30 (MQ=255) gCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttcca < 2:468328‑M1/151‑36 (MQ=255) gCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttc < 2:131700‑M1/149‑34 (MQ=255) gCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttc < 2:593171‑M1/149‑34 (MQ=255) gCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttc < 1:258373‑M1/149‑34 (MQ=255) cACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacc < 1:728258‑M1/151‑38 (MQ=255) cAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggc > 2:35053‑M1/1‑110 (MQ=255) aaTCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggcc > 2:358878‑M1/1‑109 (MQ=255) gTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggcccc > 1:471126‑M1/1‑104 (MQ=255) aCGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaacc > 2:205521‑M1/1‑100 (MQ=255) cGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGGGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtgtttccacccggccccagaacc < 1:16747‑M1/149‑51 (MQ=255) cAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacgg < 2:555276‑M1/151‑55 (MQ=255) aGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggt > 1:438834‑M1/1‑96 (MQ=255) ccAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggta > 2:512275‑M1/1‑94 (MQ=255) cAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatg < 1:2725‑M1/151‑59 (MQ=255) aaTCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaat > 1:11483‑M1/1‑88 (MQ=255) aTCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaat > 2:390505‑M1/1‑87 (MQ=255) tctggtctTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagac > 2:312023‑M1/4‑86 (MQ=255) ggTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactga < 1:390549‑M1/151‑69 (MQ=255) ggTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactg > 2:138759‑M1/1‑83 (MQ=255) cATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccg < 1:27990‑M1/151‑75 (MQ=255) cATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataacc < 2:93657‑M1/150‑74 (MQ=255) gTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtt < 2:397316‑M1/150‑77 (MQ=255) cGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtt > 1:401689‑M1/1‑70 (MQ=255) gAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacgttttttccccccggccccagaaccacggtatgaatagactgataaccgtttggtt < 1:80149‑M1/150‑82 (MQ=255) gcgcCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggt < 1:568389‑M1/150‑88 (MQ=255) cgccgcCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttcaacccggcaccagaaccacggtatgaatagactgataaccgtttggtttcgggtt > 2:811695‑M1/1‑62 (MQ=255) ccAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgac < 2:489154‑M1/151‑95 (MQ=255) gcCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatc < 1:610465‑M1/151‑101 (MQ=255) gcCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatc < 2:296533‑M1/151‑101 (MQ=255) gcCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtca > 2:53039‑M1/1‑46 (MQ=255) ctctTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaact > 1:400719‑M1/1‑43 (MQ=255) tttATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaactcat > 2:569291‑M1/1‑40 (MQ=255) ttATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaactca < 2:57371‑M1/149‑111 (MQ=255) atatTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaactcatcc < 1:31458‑M1/150‑114 (MQ=255) atatTTCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaacgcatcc < 1:435029‑M1/150‑114 (MQ=255) ttCCAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaactcatccggca < 1:88120‑M1/150‑118 (MQ=255) cAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaactcatccggcaggtg > 1:521526‑M1/1‑30 (MQ=255) cAGTGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaactcatccggcaggtg < 2:656444‑M1/151‑122 (MQ=255) tGCGCAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaactcatccggcaggtggcg > 2:345158‑M1/1‑27 (MQ=255) cgcAGCAACACCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaactcatccagcaggtggcgat > 1:389812‑M1/1‑25 (MQ=255) cacCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaactcatccggcaggtggcgatagtgagtg > 2:459825‑M1/1‑17 (MQ=255) cacCCAACTCTGCATCTgtttggtgcggatttggatctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaactcatccggcaggtggcgatagtgagtg > 2:342660‑M1/1‑17 (MQ=255) aCTCTGCATCTgtttggggcggatttggagctcaacggtttttccacccggccccagaaccacggtatgaatagactgataaccgtttggtttcgggttagcgacgtaatcgtcaaactcatccggcaggtggcgatagtgagtgtgcact > 1:376620‑M1/1‑11 (MQ=255) | GCATTTCGCCGGAATCAGCCATCTCTTCCTGCCACGCAATCAGTTTACGCAGCCAGGCAATCCGGTCTTCATGTCCCGAACGTGCGCCGCCAGCAGCCGCGCCCTCTTTATATTTCCAGTGCGCAGCAACACCCAACTCTGCATCTTCATGCATCTGTTTGGTGCGGATTTGGATCTCAACGGTTTTTCCACCCGGCCCCAGAACCACGGTATGAATAGACTGATAACCGTTTGGTTTCGGGTTAGCGACGTAATCGTCAAACTCATCCGGCAGGTGGCGATAGTG > NC_000913/2912472‑2912757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |