mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 159 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 58.6% | ‑2.4 / 26.5 | 29 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,585,086 | 0 | A | C | 52.9% | 59.0 / 87.4 | 51 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltranspeptidase |
| * | NC_000913 | 599,576 | 0 | T | G | 48.8% | 49.4 / 16.7 | 41 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 1,622,816 | 0 | G | A | 45.8% | 19.6 / 51.3 | 48 | intergenic (+75/+144) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 29,496 | 0 | T | A | 44.6% | 87.9 / 44.5 | 74 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 17,041 | 0 | G | C | 43.9% | 48.1 / 20.9 | 41 | intergenic (‑81/‑448) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/sodium‑proton antiporter |
| * | NC_000913 | 1,622,802 | 0 | A | T | 43.9% | 55.1 / 14.2 | 41 | intergenic (+61/+158) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 29,486 | 0 | C | A | 43.1% | 117.3 / 41.1 | 72 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 1,755,871 | 0 | T | A | 42.9% | 44.6 / 17.0 | 35 | G58G (GGT→GGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 3,585,058 | 0 | T | C | 42.9% | 66.4 / 12.7 | 49 | intergenic (+15/+23) | yrhB/ggt | stable heat shock chaperone/gamma‑glutamyltranspeptidase |
| * | NC_000913 | 4,538,109 | 0 | A | C | 42.9% | 94.1 / 16.9 | 57 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 1,755,862 | 0 | C | A | 42.4% | 52.7 / 12.7 | 34 | S55R (AGC→AGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 1,435,718 | 0 | G | A | 41.9% | 59.9 / 19.5 | 43 | intergenic (‑99/+42) | uspF/ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
| * | NC_000913 | 2,252,646 | 0 | T | G | 41.9% | 65.0 / 13.3 | 44 | V316G (GTA→GGA) | yeiI | putative kinase |
| * | NC_000913 | 1,622,815 | 0 | C | A | 41.7% | 61.6 / 23.5 | 48 | intergenic (+74/+145) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 2,337,723 | 0 | A | C | 40.8% | 71.4 / 15.8 | 51 | G566G (GGT→GGG) | gyrA | DNA gyrase (type II topoisomerase), subunit A |
| * | NC_000913 | 1,413,735 | 0 | A | T | 40.5% | 48.9 / 20.1 | 37 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 3,508,657 | 0 | A | G | 40.0% | 79.0 / 11.0 | 56 | F386S (TTC→TCC) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 2,601,784 | 0 | A | G | 39.6% | 76.6 / 16.0 | 54 | E195G (GAG→GGG) | hyfA | hydrogenase 4, 4Fe‑4S subunit |
| * | NC_000913 | 4,171,885 | 0 | A | G | 39.4% | 40.3 / 14.3 | 34 | intergenic (+129/‑172) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |