mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 427 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,480,371 | 0 | T | G | 54.0% | 68.3 / 94.8 | 63 | G390G (GGT→GGG) | dsdA | D‑serine dehydratase |
| * | NC_000913 | 4,112,578 | 0 | T | G | 52.9% | 77.6 / 108.9 | 70 | G88G (GGT→GGG) | yiiR | DUF805 family putative inner membrane protein |
| * | NC_000913 | 2,480,380 | 0 | A | G | 51.6% | 58.7 / 91.3 | 64 | G393G (GGA→GGG) | dsdA | D‑serine dehydratase |
| * | NC_000913 | 436,516 | 0 | C | A | 50.0% | 52.9 / 48.9 | 66 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 2,480,376 | 0 | C | G | 46.9% | 63.0 / 33.7 | 65 | A392G (GCC→GGC) | dsdA | D‑serine dehydratase |
| * | NC_000913 | 3,705,653 | 0 | T | G | 46.7% | 72.2 / 32.0 | 60 | P46P (CCA→CCC) | dppB | dipeptide/heme ABC transporter permease |
| * | NC_000913 | 4,112,599 | 0 | T | G | 46.3% | 113.4 / 14.4 | 68 | G95G (GGT→GGG) | yiiR | DUF805 family putative inner membrane protein |
| * | NC_000913 | 354,288 | 0 | T | G | 46.0% | 56.1 / 21.3 | 50 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 993,917 | 0 | A | C | 45.8% | 65.7 / 15.7 | 49 | V43G (GTG→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 1,622,816 | 0 | G | A | 43.9% | 46.3 / 68.6 | 66 | intergenic (+75/+144) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 599,576 | 0 | T | G | 43.1% | 113.1 / 14.8 | 65 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 298,960 | 0 | A | C | 42.9% | 88.0 / 19.4 | 56 | Y659D (TAT→GAT) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 993,913 | 0 | G | C | 42.0% | 76.2 / 16.7 | 51 | G44G (GGC→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 213,341 | 0 | A | G | 42.0% | 119.9 / 25.3 | 81 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 1,079,468 | 0 | A | G | 41.4% | 88.0 / 19.9 | 58 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 3,443,277 | 0 | A | C | 41.4% | 93.1 / 22.8 | 58 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 2,248,431 | 0 | A | C | 41.0% | 96.3 / 15.9 | 61 | G34G (GGT→GGG) | lysP | lysine transporter |
| * | NC_000913 | 3,285,853 | 0 | G | T | 41.0% | 103.3 / 27.3 | 61 | A126S (GCC→TCC) | agaD | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| * | NC_000913 | 3,705,661 | 0 | T | C | 41.0% | 81.4 / 27.5 | 63 | I44V (ATC→GTC) | dppB | dipeptide/heme ABC transporter permease |
| * | NC_000913 | 2,481,804 | 0 | G | A | 40.8% | 114.2 / 33.2 | 71 | P125S (CCA→TCA) | emrY | putative multidrug efflux system |