| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3966715 | 8 (0.220) | 25 (0.690) +GAT |
25/286 | 0.7 | 75.9% | coding (299/1260 nt) | rho | transcription termination factor |
| ? | NC_000913 | 3966716 = | 8 (0.220) | coding (300/1260 nt) | rho | transcription termination factor | |||||
GGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA‑‑‑GATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATG > NC_000913/3966573‑3966857 | ggCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattc < 2:451397‑M1/151‑9 (MQ=255)ggCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGCCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTCTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgat > 1:346767‑M1/1‑143 (MQ=255) gTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcc < 1:215737‑M1/151‑12 (MQ=255) aCTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgccc < 1:355774‑M1/150‑13 (MQ=255) tGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgcc > 2:185012‑M1/1‑136 (MQ=255) tatTGCAGGATGGATTTGGTTTCCTCCGATCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGCAAgatgattcgcccgccgaa > 1:421953‑M1/1‑130 (MQ=255) ttGCAGGTTGGTTTTGTTTTCCTCCTTCCCGCAGACACCCCCTCCCCCGCCGGTCCTGATGACATCTACGTTCCCCCTAGCAAAATCCGCCGTTTCAACCTCCGCCCGGGTGATACCATCTCTGGTAAGATGATTCGCCCGCCGAaaga < 1:386459/149‑1 (MQ=255) agtatgtttttGTTTCCCTCCTTCCCGCAGACACCTCCTCCCTCGCCGGCCCTGATGACATCTACTTTCCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGt < 2:327683/141‑1 (MQ=255) atTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctat > 1:165210‑M1/1‑117 (MQ=255) ttGTTTTCCTCCGTTCCCCAGACACCCCCTCCCCCGCCGGTCCTGATGACATCTCCTTTCCCCCTACCCAAATCCGCCGTTTCAACCCCCGCACTGGTGATCCCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGTGAACGCTAtt < 1:280008/150‑1 (MQ=255) tGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctatttt > 2:563818‑M1/1‑114 (MQ=255) ggTTTCCTCCGTTCCCCAGCCAGCTCCTACCCCGCCGGTCCTGATGACATCTACGTTCCCCCTAGCAAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattt < 2:264172‑M1/149‑37 (MQ=255) tccctcgGTCCCGCAGACACCCCCTCCCTCCCCGGCCAGGATGCCATCTACTTTCCCCCTAGCCAAACCCGCCGTTTCAACCTCCGCACGGGTGATACCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTgcg < 1:316865/148‑1 (MQ=255) cctcgttcccGCAGACAGCCCATACCTCGCCGATCCTGATGACATCTACGTTCCCCCTAGCCAAAGCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA‑‑‑GATTCGCCCGCTGAAAGAAGGTGAACGCTATTTTGCgctgct < 1:39292/142‑1 (MQ=255) cctccGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctg > 2:283593‑M1/1‑108 (MQ=255) gTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctga > 1:519133‑M1/1‑103 (MQ=255) actcccTCGCCGTCCCTTATCCCATCTACTTTCCCCCAACCAAAACCCGCCGTTTCAACCCCCGCACGGGTGATCCCTTCTCTGGAAAGAGGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACgg < 1:455297/141‑2 (MQ=255) tACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaact > 1:229842‑M1/1‑86 (MQ=255) ccTCGCGGGTCCTGATGACATCTACTTTCCCCCTAGCCAAACCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttc < 2:106287‑M1/151‑68 (MQ=255) ccgccccTGATGACATCTGCTTTCCCCCTACCAAACCCCGCCGTTTCACCCCCCGCACTGGTGATACCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGAc < 1:74067/144‑1 (MQ=255) ccTGATGACATCTACTTTCCCCCTACCCAAATCCGCCGTTTCACCCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctg < 2:469256‑M1/151‑78 (MQ=255) ccTAATAACATCTACTTTCCCCCTACCAAAACCCCCCTTTTCACCCCCCCCACTTTTAATCCCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAAc < 1:200890/148‑1 (MQ=255) tgaCATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaac > 2:140048‑M1/1‑69 (MQ=255) cttccccccgacccAAACCCGCCGTTCCACCCCCCGCACTGGTGATCCCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcc < 1:404448‑M1/140‑86 (MQ=255) ttccccctagCCAAACCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccg < 2:195880‑M1/142‑88 (MQ=255) cccaacccaaacccGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGAAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatc < 1:486981‑M1/145‑98 (MQ=255) cTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcct > 2:113314‑M1/1‑52 (MQ=255) aGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctct > 1:91254‑M1/1‑50 (MQ=255) ccAAACCCGCCGTTTCACCCCCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctct < 1:130845‑M1/149‑102 (MQ=255) ccgccgTTTCACCCTCCGCACTGGTGATACCATCTCTGGAAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgag < 1:315997‑M1/148‑107 (MQ=255) tGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcacgcaaac > 2:421385‑M1/1‑21 (MQ=255) tctGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcacgcaaactctcgtctgcgt > 1:511283‑M1/1‑8 (MQ=255) ggTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcacgcaaactctcgtctgcgtatg < 2:163950‑M1/150‑146 (MQ=255) | GGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA‑‑‑GATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATG > NC_000913/3966573‑3966857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |