| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3966715 | 8 (0.220) | 25 (0.690) +GAT |
25/286 | 0.7 | 75.9% | coding (299/1260 nt) | rho | transcription termination factor |
| ? | NC_000913 | 3966716 = | 8 (0.220) | coding (300/1260 nt) | rho | transcription termination factor | |||||
GGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA‑‑‑GATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTG > NC_000913/3966573‑3966864 | ggcgtactggagatattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTc < 2:451397‑M2/5‑1 (MQ=255)ggcgtactggagatattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggccctgatgacatctacgtttcccctagccaaatccgccgtctcaacctccgcactggtgataccatctctggtaagatgat > 1:346767‑M2/147‑149 (MQ=255) gtactggagatattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTcgcc < 1:215737‑M2/8‑1 (MQ=255) actggagatattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTcgccc < 1:355774‑M2/9‑1 (MQ=255) tggagatattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTcgcccgcc > 2:185012‑M2/140‑151 (MQ=255) tattgcaggatggatttggtttcctccgatccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggcaagatGATTCGCCCGCCGaa > 1:421953‑M2/134‑148 (MQ=255) ttGCAGGTTGGTTTTGTTTTCCTCCTTCCCGCAGACACCCCCTCCCCCGCCGGTCCTGATGACATCTACGTTCCCCCTAGCAAAATCCGCCGTTTCAACCTCCGCCCGGGTGATACCATCTCTGGTAAGATGATTCGCCCGCCGAaaga < 1:386459/149‑1 (MQ=255) agtatgtttttGTTTCCCTCCTTCCCGCAGACACCTCCTCCCTCGCCGGCCCTGATGACATCTACTTTCCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGt < 2:327683/141‑1 (MQ=255) atttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTAt > 1:165210‑M2/121‑151 (MQ=255) ttGTTTTCCTCCGTTCCCCAGACACCCCCTCCCCCGCCGGTCCTGATGACATCTCCTTTCCCCCTACCCAAATCCGCCGTTTCAACCCCCGCACTGGTGATCCCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGTGAACGCTAtt < 1:280008/150‑1 (MQ=255) tggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTAtttt > 2:563818‑M2/118‑151 (MQ=255) ggtttcctccgttccccagccagctcctaccccgccggtcctgatgacatctacgttccccctagcaaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTAttt < 2:264172‑M2/33‑1 (MQ=255) tccctcgGTCCCGCAGACACCCCCTCCCTCCCCGGCCAGGATGCCATCTACTTTCCCCCTAGCCAAACCCGCCGTTTCAACCTCCGCACGGGTGATACCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTgcg < 1:316865/148‑1 (MQ=255) cctcgttcccGCAGACAGCCCATACCTCGCCGATCCTGATGACATCTACGTTCCCCCTAGCCAAAGCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA‑‑‑GATTCGCCCGCTGAAAGAAGGTGAACGCTATTTTGCgctgct < 1:39292/142‑1 (MQ=255) cctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCgctg > 2:283593‑M2/112‑151 (MQ=255) gttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGa > 1:519133‑M2/107‑150 (MQ=255) actcccTCGCCGTCCCTTATCCCATCTACTTTCCCCCAACCAAAACCCGCCGTTTCAACCCCCGCACGGGTGATCCCTTCTCTGGAAAGAGGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACgg < 1:455297/141‑2 (MQ=255) tacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACt > 1:229842‑M2/90‑151 (MQ=255) cctcgcgggtcctgatgacatctactttccccctagccaaacccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTc < 2:106287‑M2/64‑1 (MQ=255) ccgccccTGATGACATCTGCTTTCCCCCTACCAAACCCCGCCGTTTCACCCCCCGCACTGGTGATACCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGAc < 1:74067/144‑1 (MQ=255) cctgatgacatctactttccccctacccaaatccgccgtttcaccctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTg < 2:469256‑M2/74‑1 (MQ=255) ccTAATAACATCTACTTTCCCCCTACCAAAACCCCCCTTTTCACCCCCCCCACTTTTAATCCCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAAc < 1:200890/148‑1 (MQ=255) tgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAAc > 2:140048‑M2/73‑151 (MQ=255) cttccccccgacccaaacccgccgttccaccccccgcactggtgatcccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGcc < 1:404448‑M2/82‑1 (MQ=255) ttccccctagccaaacccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCg < 2:195880‑M2/84‑1 (MQ=255) cccaacccaaacccgccgtttcaacctccgcactggtgataccatctctggaaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATc < 1:486981‑M2/94‑1 (MQ=255) ctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCct > 2:113314‑M2/56‑151 (MQ=255) agccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCctct > 1:91254‑M2/54‑151 (MQ=255) ccaaacccgccgtttcaccccccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCctct < 1:130845‑M2/98‑1 (MQ=255) ccgccgtttcaccctccgcactggtgataccatctctggaaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTgag < 1:315997‑M2/103‑1 (MQ=255) tggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAAc > 2:421385‑M2/25‑151 (MQ=255) tctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGt > 1:511283‑M2/12‑150 (MQ=255) ggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATg < 2:163950‑M2/142‑1 (MQ=255) atGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTg < 2:299465‑M2/149‑1 (MQ=255) | GGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA‑‑‑GATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTG > NC_000913/3966573‑3966864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |