| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,966,718 | +GAT | coding (302/1260 nt) | rho → | transcription termination factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3966715 | 2 (0.080) | 29 (1.180) +GAT |
28/286 | 0.1 | 93.6% | coding (299/1260 nt) | rho | transcription termination factor |
| ? | NC_000913 | 3966716 = | 2 (0.080) | coding (300/1260 nt) | rho | transcription termination factor | |||||
GGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA‑‑‑GATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAAC > NC_000913/3966573‑3966861 | ggCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattc < 2:356445‑M1/151‑9 (MQ=255)ggCGTAATGGAGATATTGCAGGATGGATTTGGCTTCCTCCGTTCAGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattc > 1:58751‑M1/1‑143 (MQ=255) gCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcg > 2:394234‑M1/1‑142 (MQ=255) cGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcg > 2:87199‑M1/1‑141 (MQ=255) gTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcc > 2:220762‑M1/1‑140 (MQ=255) cTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccg < 1:337085‑M1/150‑14 (MQ=255) tGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgcc > 1:290448‑M1/1‑136 (MQ=255) aGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtg > 2:163165‑M1/1‑124 (MQ=255) gatggatTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaac > 2:14683‑M1/1‑122 (MQ=255) tttGGTTTCCTCCGTTCCGCAGACAGCTCCTCCCTCGCCGGTCCTGATGACATCTACTTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgcta < 2:88345‑M1/149‑34 (MQ=255) ctcctcCCCCGCCGGTCCTGATACCATTTACTTTCCCCCTAGCAAAACCCGCCGTTTCAACCCCCGCACTGGTGATACCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTaa < 1:76613/144‑1 (MQ=255) cctccctcGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAACCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaa < 2:210951‑M1/151‑64 (MQ=255) ccctCGCCGGTCCTGATGACATTTGCTTTTCCCCTAGCAAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaa < 1:159651‑M1/147‑64 (MQ=255) aCCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaactt > 1:123659‑M1/1‑85 (MQ=255) cGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGCTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgac > 2:79436‑M1/1‑81 (MQ=255) tCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacct > 2:213640‑M1/1‑75 (MQ=255) aTCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgccc > 2:282407‑M1/1‑65 (MQ=255) tCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccg > 1:132042‑M1/1‑64 (MQ=255) tttCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaa < 2:237295‑M1/148‑91 (MQ=255) tttCCCCTAGCAAAACCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgccc < 2:269088‑M1/144‑87 (MQ=255) ttccccctacCAAAACCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgca < 2:96828‑M1/144‑90 (MQ=255) aaaTCAGCAGTTTCAACCTCCCCACGGGTGCTACCCTACCTGGTAAGACGATTCTCCCGCCGCAAGAAGGTGAAAGCTATTTGGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACATGAAATCGACCGCAACAAAATCCTCTTTg > 1:292268/1‑150 (MQ=255) aaaCCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctcttt < 2:244372‑M1/149‑104 (MQ=255) tCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgaga > 2:311580‑M1/1‑43 (MQ=255) gTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaac > 2:278436‑M1/1‑37 (MQ=255) cAACCTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccg > 1:144639‑M1/1‑33 (MQ=255) ccTCCGCACTGGTGATACCATCTCTGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctg > 1:276272‑M1/1‑30 (MQ=255) tctGGTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcacgcaaactctcgtctgcgt > 1:122542‑M1/1‑8 (MQ=255) tGGTAAgatgtttcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcacgcaaactctcgtctgcgtat < 2:246019‑M1/150‑145 (MQ=255) ggTAAgatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcacgcaaactctcgtctgcgtat < 1:179437‑M1/149‑145 (MQ=255) ggTAAgatgattcccccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcacgcaaactctcgtctgcg < 1:225833‑M1/146‑142 (MQ=255) aagatgattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcacgcaaactctcgtctgcgtatggaac < 2:77245‑M1/151‑150 (MQ=255) | GGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA‑‑‑GATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAAC > NC_000913/3966573‑3966861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |