| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,966,718 | +GAT | coding (302/1260 nt) | rho → | transcription termination factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3966715 | 2 (0.080) | 29 (1.180) +GAT |
28/286 | 0.1 | 93.6% | coding (299/1260 nt) | rho | transcription termination factor |
| ? | NC_000913 | 3966716 = | 2 (0.080) | coding (300/1260 nt) | rho | transcription termination factor | |||||
GGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA‑‑‑GATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGT > NC_000913/3966573‑3966866 | ggcgtactggagatattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTc < 2:356445‑M2/5‑1 (MQ=255)ggcgtaatggagatattgcaggatggatttggcttcctccgttcagcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTc > 1:58751‑M2/147‑151 (MQ=255) gcgtactggagatattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTcg > 2:394234‑M2/146‑151 (MQ=255) cgtactggagatattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTcg > 2:87199‑M2/145‑150 (MQ=255) gtactggagatattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTcgcc > 2:220762‑M2/144‑151 (MQ=255) ctggagatattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTcgcccg < 1:337085‑M2/10‑1 (MQ=255) tggagatattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTcgcccgcc > 1:290448‑M2/140‑151 (MQ=255) aggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTg > 2:163165‑M2/128‑150 (MQ=255) gatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAAc > 2:14683‑M2/126‑151 (MQ=255) tttggtttcctccgttccgcagacagctcctccctcgccggtcctgatgacatctacttttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTa < 2:88345‑M2/30‑1 (MQ=255) ctcctcCCCCGCCGGTCCTGATACCATTTACTTTCCCCCTAGCAAAACCCGCCGTTTCAACCCCCGCACTGGTGATACCATCTCTGGTAAGATGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTaa < 1:76613/144‑1 (MQ=255) cctccctcgccggtcctgatgacatctacgtttcccctagccaaacccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTaa < 2:210951‑M2/60‑1 (MQ=255) ccctcgccggtcctgatgacatttgcttttcccctagcaaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTaa < 1:159651‑M2/60‑1 (MQ=255) acctcgccggtcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACtt > 1:123659‑M2/89‑151 (MQ=255) cgccggtcctgatgacatctacgtttcccctagccaaatccgccgcttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGAc > 2:79436‑M2/85‑151 (MQ=255) tcctgatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCt > 2:213640‑M2/79‑151 (MQ=255) atctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGccc > 2:282407‑M2/69‑151 (MQ=255) tctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCg > 1:132042‑M2/68‑151 (MQ=255) tttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGcaa < 2:237295‑M2/87‑1 (MQ=255) tttcccctagcaaaacccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGccc < 2:269088‑M2/83‑1 (MQ=255) ttccccctaccaaaacccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGca < 2:96828‑M2/86‑1 (MQ=255) aaacccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCttt < 2:244372‑M2/100‑1 (MQ=255) aaaTCAGCAGTTTCAACCTCCCCACGGGTGCTACCCTACCTGGTAAGACGATTCTCCCGCCGCAAGAAGGTGAAAGCTATTTGGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACATGAAATCGACCGCAACAAAATCCTCTTTg > 1:292268/1‑150 (MQ=255) tccgccgtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTgaga > 2:311580‑M2/47‑150 (MQ=255) gtttcaacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAAc > 2:278436‑M2/41‑151 (MQ=255) caacctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCg > 1:144639‑M2/37‑151 (MQ=255) cctccgcactggtgataccatctctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTg > 1:276272‑M2/34‑151 (MQ=255) tctggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGt > 1:122542‑M2/12‑150 (MQ=255) tggtaagatGTTTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTAt < 2:246019‑M2/141‑1 (MQ=255) ggtaagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTAt < 1:179437‑M2/141‑1 (MQ=255) ggtaagatGATTCCCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCg < 1:225833‑M2/138‑1 (MQ=255) aagatGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAAc < 2:77245‑M2/146‑1 (MQ=255) gatGATACCCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACg < 2:279580‑M2/147‑1 (MQ=255) gATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGt > 2:389679/1‑151 (MQ=255) | GGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAA‑‑‑GATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGT > NC_000913/3966573‑3966866 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |