Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
JC JC | NC_000913 | 3,328,463 | IS4 (–) +11 bp | coding (243‑253/477 nt) | greA ← | transcript cleavage factor |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 3328463 = | 0 (0.000) | 50 (1.100) | 46/298 | 0.1 | 100% | coding (253/477 nt) | greA | transcript cleavage factor |
? | NC_000913 | = 4503515 | NA (NA) | noncoding (1/1426 nt) | IS4 | repeat region | |||||
* | ? | NC_000913 | = 3328473 | 0 (0.000) | 47 (1.050) | 42/294 | 0.2 | 100% | coding (243/477 nt) | greA | transcript cleavage factor |
? | NC_000913 | 4502090 = | NA (NA) | noncoding (1426/1426 nt) | IS4 | repeat region |
CAGGCCACGAGCAATAGGCGAGTTTACAGAAATCAGGTTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3328326‑3328473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGCATCAGCT > NC_000913/4502090‑4502239 CAGGCCACGAGCAATAGGCGAGTTTACAGAAATCAGGTTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAA < 1:482085/151‑1 ACGAGCAATAGGCGAGTTTACAGAAATCAGGTTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAG < 2:215563/151‑1 GAGCAATAGGCGAGTTTACAGAAATCAGGTTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTC < 1:169469/151‑1 AGCAATAGGCGAGTTTACAGAAATCAGGTTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCA < 2:400924/151‑1 AGGCGAGTTTACAGAAATCAGGTTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTA > 1:298314/1‑149 GTTTACAGAAATCAGGTTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTG > 2:42047/1‑151 CAGAAATCAGGTTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGG < 1:566367/151‑1 AGAAATCAGGTTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGC > 2:69467/1‑151 GAAATCAGGTTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGGTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCT < 2:170355/151‑1 TTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGG > 1:273427/1‑151 TTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTT > 2:530079/1‑148 TTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGG < 2:54847/150‑1 TGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGC > 1:144505/1‑151 GTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGT < 1:488120/151‑1 AGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATT > 1:118584/1‑151 AGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATT > 1:247339/1‑151 gTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCC > 2:292215/2‑151 TCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCC > 1:546997/1‑150 GTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGG < 1:188702/151‑1 GATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACT > 2:191161/1‑151 GATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACACGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTAGCTCTTTTTCGGGGCTGTGGGGTCTTTCCACGGCCTCTCCTTTccga > 2:611883/1‑145 AAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTC < 1:272590/151‑1 AAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCT < 2:663710/150‑1 AAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCT < 1:709123/150‑1 CTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGG > 1:656668/1‑150 GTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAA < 2:625825/150‑1 GTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGG < 2:358418/148‑1 CAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCC < 1:192745/151‑1 AGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCC > 1:82607/1‑151 AATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTT > 2:100229/1‑151 ATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTC < 2:631562/151‑1 CAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGTCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGT > 1:139129/1‑150 CAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTA < 2:247314/151‑1 GCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAAT < 1:525346/151‑1 CACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATT > 2:167754/1‑151 CGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTC > 1:307136/1‑150 CGGTAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGT < 1:676808/151‑1 TAGCACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGT > 1:3272/1‑151 ACCAAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCA < 1:657149/151‑1 AAAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATAC > 1:320129/1‑151 AAAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACT > 2:145112/1‑151 AAATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTT < 1:17280/151‑1 AATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTG < 2:272244/151‑1 ATAACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGC > 2:566293/1‑151 AACGCGCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAA < 1:283052/151‑1 GCCCATTGTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCG < 1:147061/151‑1 GTTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGCATCA < 1:316939/151‑1 TGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGCATCAGC > 1:321669/1‑151 TGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGCATCAG < 2:644885/150‑1 GTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGCATCAGCT < 2:545592/151‑1 GTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGCATCA < 2:426284/148‑1 CAGGCCACGAGCAATAGGCGAGTTTACAGAAATCAGGTTTTGTTTAAAGTCAGCTTCGTCATCGCCAACGATGCGATAAGTCTGTTCTTCGTCAGAATCCAGATTCAGCACCGTTACGGTAGCACCAAAAATAACGCGCCCATTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3328326‑3328473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGCATCAGCT > NC_000913/4502090‑4502239 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |