mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 181 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,356,201 | 0 | T | G | 54.5% | 20.4 / 44.6 | 33 | T304P (ACC→CCC) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| * | NC_000913 | 357,890 | 0 | C | A | 54.2% | 5.8 / 33.1 | 24 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,376,505 | 0 | A | C | 51.1% | 47.4 / 73.8 | 47 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 1,755,871 | 0 | T | A | 50.0% | 25.4 / 23.5 | 34 | G58G (GGT→GGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 1,312,213 | 0 | G | A | 46.3% | 39.6 / 23.5 | 41 | L12F (CTT→TTT) | yciA | acyl‑CoA esterase |
| * | NC_000913 | 3,443,277 | 0 | A | C | 46.2% | 48.1 / 15.0 | 39 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 1,461,121 | 0 | C | G | 45.7% | 34.7 / 11.1 | 35 | L77V (CTG→GTG) | paaJ | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| * | NC_000913 | 3,601,176 | 0 | T | C | 45.5% | 53.6 / 19.6 | 45 | E304G (GAA→GGA) | ftsX | putative ABC transporter permease |
| * | NC_000913 | 298,960 | 0 | A | C | 45.0% | 50.9 / 12.5 | 40 | Y659D (TAT→GAT) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 987,522 | 0 | C | A | 45.0% | 64.4 / 23.3 | 40 | intergenic (‑540/+63) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 44.7% | 34.6 / 22.2 | 39 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 941,713 | 0 | T | G | 44.2% | 62.7 / 14.7 | 43 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 2,603,342 | 0 | A | C | 43.9% | 47.4 / 26.5 | 41 | T509P (ACC→CCC) | hyfB | hydrogenase 4, membrane subunit |
| * | NC_000913 | 4,486,580 | 0 | A | G | 43.8% | 60.6 / 16.3 | 48 | G121G (GGA→GGG) | lptF | lipopolysaccharide export ABC permease |
| * | NC_000913 | 4,604,344 | 0 | C | T | 43.4% | 49.1 / 26.4 | 53 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 2,421,437 | 0 | T | C | 43.2% | 47.0 / 12.2 | 37 | I38T (ATC→ACC) | folX | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| * | NC_000913 | 1,163,371 | 0 | C | T | 43.2% | 43.4 / 29.1 | 44 | L38F (CTC→TTC) | thiK | thiamine kinase |
| * | NC_000913 | 3,864,099 | 0 | C | A | 43.1% | 71.4 / 20.0 | 51 | R67R (CGC→CGA) | yidP | UTRA domain‑containing GntR family putative transcriptional regulator |
| * | NC_000913 | 1,312,200 | 0 | G | A | 42.9% | 47.6 / 16.7 | 42 | T16I (ACT→ATT) | yciA | acyl‑CoA esterase |
| * | NC_000913 | 1,461,137 | 0 | C | T | 42.9% | 31.1 / 12.6 | 35 | S82F (TCC→TTC) | paaJ | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |