Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,377,359 Δ18 bp coding (45‑62/639 nt) sspA ← stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3377359 3377376 18 105 [0] [0] 106 sspA stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 33773580 (0.000)105 (1.190) 86/298 0.0 100% coding (63/639 nt) sspA stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog
?NC_000913 3377377 = 0 (0.000)coding (44/639 nt) sspA stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog

Only 100 of 106 total aligned reads displayed.

TCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAA  >  NC_000913/3377230‑3377527
                                                                                                                                                   |                                                                                                                                                      
cacagggtcagctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGaaa                                                                                                                                                     <  1:908934‑M2/4‑1 (MQ=255)
cacagggtcagctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGaa                                                                                                                                                      >  2:1302655‑M2/148‑150 (MQ=255)
 acagggtcagctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGaaa                                                                                                                                                     >  2:795314‑M2/147‑150 (MQ=255)
 acagggtcagctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtcctgttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGaaaa                                                                                                                                                    <  1:565073‑M2/5‑1 (MQ=255)
   agggtcagctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACa                                                                                                                                                  <  1:909848‑M2/7‑1 (MQ=255)
     ggtcagctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGc                                                                                                                                                >  1:223966‑M2/143‑151 (MQ=255)
       tcagctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGt                                                                                                                                              >  1:881692‑M2/141‑151 (MQ=255)
       tcagctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGt                                                                                                                                              >  1:762141‑M2/141‑151 (MQ=255)
        cagctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTc                                                                                                                                             <  1:794687‑M2/12‑1 (MQ=255)
        cagctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTc                                                                                                                                             <  2:1347644‑M2/12‑1 (MQ=255)
        cagctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTc                                                                                                                                             <  1:393085‑M2/12‑1 (MQ=255)
         agctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTc                                                                                                                                             >  1:941792‑M2/139‑150 (MQ=255)
         agctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTc                                                                                                                                             >  1:1179098‑M2/139‑150 (MQ=255)
         agctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCa                                                                                                                                            <  1:717245‑M2/13‑1 (MQ=255)
           ctcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCAtt                                                                                                                                          >  2:592916‑M2/137‑151 (MQ=255)
            tcacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCAtt                                                                                                                                          >  2:482094‑M2/136‑150 (MQ=255)
             cacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTAc                                                                                                                                        >  2:295676‑M2/135‑151 (MQ=255)
             cacgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTAc                                                                                                                                        >  2:746752‑M2/135‑151 (MQ=255)
               cgatccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCg                                                                                                                                      <  1:1157160‑M2/19‑1 (MQ=255)
                 atccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGaa                                                                                                                                    <  2:1145123‑M2/21‑1 (MQ=255)
                   ccaccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACg                                                                                                                                  <  2:416435‑M2/23‑1 (MQ=255)
                      ccagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGTAAACAGCGTCATTACCGAACGttt                                                                                                                               <  1:469297‑M2/26‑1 (MQ=255)
                       cagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTttg                                                                                                                              <  1:507460‑M2/27‑1 (MQ=255)
                       cagggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacgtacaccggtctcagccagcacaatgcggacctgagggctaGAAAACAGCGTCATTACCGAACGTttg                                                                                                                              <  1:220310‑M2/27‑1 (MQ=255)
                         gggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacccctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTttgtt                                                                                                                            <  1:103835‑M2/29‑1 (MQ=255)
                          ggtcggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCTTCATTACCGAACGTttgttg                                                                                                                           <  1:1188922‑M2/30‑1 (MQ=255)
                             cggaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgggttcgatctcgaaacttactccattctcagccagcgcaatgcggacctgatggctaGAAAACGGCGTCATTACCGAACGTTTGTTGGCa                                                                                                                        <  1:476638‑M2/33‑1 (MQ=255)
                              ggaacgctctgattctggttgacgtcaatcagagcctgaggcggattgtccttttccacgtgtgcgatcgcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTGTGTTGGCa                                                                                                                        <  1:1033819‑M2/33‑1 (MQ=255)
                               gaacgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGc                                                                                                                      >  2:92682‑M2/117‑151 (MQ=255)
                                 acgctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCg                                                                                                                     >  2:914241‑M2/115‑150 (MQ=255)
                                   gctctgattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACa                                                                                                                  <  2:1314043‑M2/39‑1 (MQ=255)
                                        gattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCa                                                                                                              <  2:137104‑M2/43‑1 (MQ=255)
                                        gattcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCAt                                                                                                             >  2:806962‑M2/108‑151 (MQ=255)
                                         attcgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATg                                                                                                            <  1:115832‑M2/45‑1 (MQ=255)
                                            cgggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGaaa                                                                                                         <  2:117671‑M2/48‑1 (MQ=255)
                                             gggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctaatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGaaa                                                                                                         >  1:332052‑M2/103‑150 (MQ=255)
                                              ggttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAAc                                                                                                       <  2:514256‑M2/50‑1 (MQ=255)
                                               gttgaggtcaatcagatcctgaggcggattgtccttttccacttgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAAcc                                                                                                      >  2:781168‑M2/101‑151 (MQ=255)
                                               gttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAAcc                                                                                                      >  1:1284514‑M2/101‑151 (MQ=255)
                                                ttgaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCt                                                                                                     >  2:456506‑M2/100‑151 (MQ=255)
                                                  gaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTcc                                                                                                   >  1:168102‑M2/98‑151 (MQ=255)
                                                  gaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTcc                                                                                                   >  1:1305609‑M2/98‑151 (MQ=255)
                                                  gaggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTc                                                                                                    <  2:330163‑M2/53‑1 (MQ=255)
                                                    ggtcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAg                                                                                                 <  1:843492‑M2/56‑1 (MQ=255)
                                                      tcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAg                                                                                                 >  1:843677‑M2/94‑149 (MQ=255)
                                                      tcaatcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGt                                                                                               >  2:245828‑M2/94‑151 (MQ=255)
                                                          tcagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGtat                                                                                             >  1:1126693‑M2/90‑149 (MQ=255)
                                                           cagatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGt                                                                                          >  2:18617‑M2/89‑151 (MQ=255)
                                                            agatcctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTc                                                                                         >  2:932205‑M2/88‑151 (MQ=255)
                                                                cctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGa                                                                                      >  2:866902‑M2/84‑150 (MQ=255)
                                                                 ctgaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAAt                                                                                    >  1:236993‑M2/83‑151 (MQ=255)
                                                                   gaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAAttt                                                                                  >  2:1262237‑M2/81‑151 (MQ=255)
                                                                   gaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAAtt                                                                                   <  1:148401‑M2/70‑1 (MQ=255)
                                                                   gaggcggattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAAt                                                                                    <  2:167848‑M2/69‑1 (MQ=255)
                                                                         gattgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTg                                                                            <  2:935376‑M2/77‑1 (MQ=255)
                                                                           ttgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCt                                                                          >  2:1260538‑M2/73‑151 (MQ=255)
                                                                           ttgtccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATCTTTACTGCt                                                                          >  2:1040901‑M2/73‑151 (MQ=255)
                                                                               ccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTAcc                                                                       >  1:405666‑M2/69‑150 (MQ=255)
                                                                               ccttttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTAcc                                                                       >  2:504189‑M2/69‑150 (MQ=255)
                                                                                  tttccacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGcc                                                                   >  2:206943‑M2/66‑151 (MQ=255)
                                                                                      cacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGccacc                                                                >  1:1355411‑M2/62‑150 (MQ=255)
                                                                                      cacgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGccacc                                                                >  2:428299‑M2/62‑150 (MQ=255)
                                                                                       acgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGccacc                                                                >  2:63530‑M2/61‑149 (MQ=255)
                                                                                       acgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTATTACTGCTACCAGccacc                                                                >  2:480803‑M2/61‑149 (MQ=255)
                                                                                        cgtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAg                                                              <  1:986201‑M2/91‑1 (MQ=255)
                                                                                         gtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGt                                                            <  1:638314‑M2/93‑1 (MQ=255)
                                                                                         gtgttcgatctcgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGt                                                            >  1:593361‑M2/59‑151 (MQ=255)
                                                                                                    cgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCa                                                       <  1:369617‑M2/98‑1 (MQ=255)
                                                                                                    cgaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCa                                                   <  2:786277‑M2/102‑1 (MQ=255)
                                                                                                     gaaacttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCa                                                   <  1:848225‑M2/102‑1 (MQ=255)
                                                                                                        acttacacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGtt                                             <  2:387002‑M2/108‑1 (MQ=255)
                                                                                                           tacacctttctcagccagcacaatgcggaactgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTtgtg                                          >  1:53268‑M2/41‑151 (MQ=255)
                                                                                                            acacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTgtgt                                         >  2:322724‑M2/40‑151 (MQ=255)
                                                                                                            acacctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTgtgt                                         >  2:419574‑M2/40‑151 (MQ=255)
                                                                                                              acctttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGtt                                        >  1:802230‑M2/38‑150 (MQ=255)
                                                                                                                  ttctcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAcc                                     <  2:612071‑M2/116‑1 (MQ=255)
                                                                                                                     tcagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAAt                                 >  1:25249‑M2/31‑150 (MQ=255)
                                                                                                                      cagccagctcaattcggacctgacggctaGAAACCAGGGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGACGTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCaa                                  <  1:724842‑M2/119‑1 (MQ=255)
                                                                                                                      cagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAAt                                 <  1:1027030‑M2/120‑1 (MQ=255)
                                                                                                                      cagccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATa                                <  1:419454‑M2/121‑1 (MQ=255)
                                                                                                                        gccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAgg                             >  1:1088026‑M2/28‑151 (MQ=255)
                                                                                                                        gccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAgg                             <  2:564101‑M2/124‑1 (MQ=255)
                                                                                                                         ccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAgg                             >  2:1083804‑M2/27‑150 (MQ=255)
                                                                                                                         ccagcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGa                            <  1:780528‑M2/125‑1 (MQ=255)
                                                                                                                           agcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAAc                          <  1:643400‑M2/127‑1 (MQ=255)
                                                                                                                            gcacaatgcggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACg                         <  1:506261‑M2/128‑1 (MQ=255)
                                                                                                                                    cggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCtt                 <  1:492861‑M2/136‑1 (MQ=255)
                                                                                                                                    cggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCtt                 >  1:1196741‑M2/16‑151 (MQ=255)
                                                                                                                                    cggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCtt                 <  2:1062522‑M2/136‑1 (MQ=255)
                                                                                                                                    cggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTAGCCAGTCAGAAGTTGTGTTCCCCAATAAGGAACGActctct                  <  2:1140757‑M2/135‑1 (MQ=255)
                                                                                                                                     ggacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCttt                >  2:309800‑M2/15‑151 (MQ=255)
                                                                                                                                      gacctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTg               >  1:865582‑M2/14‑151 (MQ=255)
                                                                                                                                        cctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGtt             <  2:26342‑M2/140‑1 (MQ=255)
                                                                                                                                        cctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTAGCTGCGACAGCCATGAAAACCTCCAGGTATCGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAAACAATAAGGAACGACTCTCTTTGtt             >  1:510564‑M2/12‑151 (MQ=255)
                                                                                                                                         ctgatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGtt             >  1:235159‑M2/11‑150 (MQ=255)
                                                                                                                                           gatggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCg           >  1:1009957‑M2/9‑150 (MQ=255)
                                                                                                                                            atggctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCg           >  1:329991‑M2/8‑149 (MQ=255)
                                                                                                                                               gctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAAt      >  1:53786‑M2/5‑151 (MQ=255)
                                                                                                                                               gctaGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAAt      <  1:1012978‑M2/147‑1 (MQ=255)
                                                                                                                                                   gAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATcaaa  <  1:901448/151‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                      
TCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAA  >  NC_000913/3377230‑3377527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: