mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 586 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,228,275 | 0 | T | C | 50.7% | 53.2 / 82.4 | 67 | pseudogene (335/1287 nt) | mdtQ | pseudogene; putative channel/filament proteins |
| * | NC_000913 | 1,621,118 | 0 | A | C | 44.8% | 72.2 / 22.8 | 59 | V7G (GTG→GGG) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | NC_000913 | 357,890 | 0 | C | A | 44.7% | 27.0 / 20.9 | 38 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,229,204 | 0 | T | C | 44.4% | 62.5 / 25.7 | 63 | intergenic (+139/+234) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| * | NC_000913 | 1,684,712 | 0 | A | C | 42.9% | 101.5 / 10.6 | 63 | T152P (ACC→CCC) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| * | NC_000913 | 599,576 | 0 | T | G | 42.4% | 97.4 / 29.0 | 66 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 2,781,645 | 0 | A | C | 42.2% | 141.9 / 22.7 | 91 | V361G (GTT→GGT) | ypjA | adhesin‑like autotransporter |
| * | NC_000913 | 1,222,596 | 0 | G | A | 41.5% | 66.3 / 40.7 | 66 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| * | NC_000913 | 1,356,201 | 0 | T | G | 41.2% | 116.1 / 19.1 | 68 | T304P (ACC→CCC) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| * | NC_000913 | 4,460,871 | 0 | T | G | 41.2% | 91.2 / 11.7 | 68 | Y597S (TAC→TCC) | nrdD | anaerobic ribonucleoside‑triphosphate reductase |
| * | NC_000913 | 811,721 | 0 | T | G | 40.9% | 126.3 / 18.9 | 90 | V67G (GTG→GGG) | bioC | malonyl‑ACP O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 1,684,749 | 0 | A | C | 40.6% | 95.4 / 10.0 | 64 | D164A (GAC→GCC) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| * | NC_000913 | 3,862,668 | 0 | A | G | 40.6% | 60.2 / 21.2 | 64 | pseudogene (936/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| * | NC_000913 | 3,508,657 | 0 | A | G | 40.5% | 126.0 / 18.7 | 85 | F386S (TTC→TCC) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 436,516 | 0 | C | A | 40.0% | 71.5 / 21.4 | 50 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 941,713 | 0 | T | G | 40.0% | 76.6 / 18.8 | 50 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 1,604,237 | 0 | C | T | 40.0% | 75.9 / 32.2 | 61 | S64L (TCG→TTG) | lsrD | autoinducer 2 import system permease protein |
| * | NC_000913 | 3,508,662 | 0 | T | A | 40.0% | 139.7 / 40.7 | 90 | E384D (GAA→GAT) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 3,862,661 | 0 | T | G | 40.0% | 38.9 / 27.8 | 67 | pseudogene (943/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| * | NC_000913 | 4,056,115 | 0 | A | C | 40.0% | 106.2 / 15.6 | 71 | G75G (GGT→GGG) | glnL | sensory histidine kinase in two‑component regulatory system with GlnG |