mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 530 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,228,222 | 0 | T | G | 53.8% | 55.1 / 78.4 | 54 | pseudogene (388/1287 nt) | mdtQ | pseudogene; putative channel/filament proteins |
| * | NC_000913 | 357,890 | 0 | C | A | 44.0% | 20.2 / 13.5 | 25 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,097,038 | 0 | A | G | 43.1% | 79.5 / 13.6 | 58 | intergenic (+209/+527) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| * | NC_000913 | 2,509,880 | 0 | A | C | 42.7% | 123.5 / 13.0 | 76 | D84A (GAC→GCC) | yfeO | putative ion channel protein |
| * | NC_000913 | 3,177,748 | 0 | C | A | 42.7% | 65.1 / 53.9 | 75 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 2,921,177 | 0 | A | C | 42.5% | 63.6 / 11.6 | 41 | G308G (GGT→GGG) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 29,496 | 0 | T | A | 42.2% | 91.4 / 40.1 | 71 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 2,984,441 | 0 | A | C | 42.1% | 96.3 / 20.1 | 57 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 354,282 | 0 | T | G | 41.5% | 109.2 / 11.6 | 65 | V526G (GTT→GGT) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 29,486 | 0 | C | A | 40.8% | 99.9 / 50.6 | 72 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 2,337,723 | 0 | A | C | 40.8% | 112.7 / 19.6 | 73 | G566G (GGT→GGG) | gyrA | DNA gyrase (type II topoisomerase), subunit A |
| * | NC_000913 | 366,526 | 0 | T | G | 40.7% | 88.7 / 14.4 | 60 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 345,328 | 0 | C | A | 40.5% | 121.8 / 53.9 | 84 | intergenic (+337/‑76) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| * | NC_000913 | 3,261,055 | 0 | A | C | 40.0% | 102.0 / 10.0 | 62 | V455G (GTG→GGG) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| * | NC_000913 | 1,376,505 | 0 | A | C | 39.4% | 107.9 / 19.3 | 66 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 3,556,207 | 0 | T | C | 39.3% | 94.1 / 23.5 | 62 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 1,621,118 | 0 | A | C | 39.2% | 109.1 / 28.5 | 76 | V7G (GTG→GGG) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | NC_000913 | 2,326,450 | 0 | T | G | 39.1% | 114.7 / 16.3 | 64 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 3,947,850 | 0 | C | T | 39.1% | 89.6 / 29.9 | 64 | E40K (GAA→AAA) | hdfR | flhDC operon transcriptional repressor |
| * | NC_000913 | 2,229,204 | 0 | T | C | 39.0% | 94.9 / 19.6 | 77 | intergenic (+139/+234) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |