Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,744,016	Δ757 bp	coding (560‑1316/1374 nt)	mdtK →	multidrug efflux system transporter

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1744016	1744772	757	96 [0]	[0] 96	mdtK	multidrug efflux system transporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1744015	0 (0.000)	95 (1.180)	80/296	0.0	100%	coding (559/1374 nt)	mdtK	multidrug efflux system transporter
	?	NC_000913	1744773 =	0 (0.000)					coding (1317/1374 nt)	mdtK	multidrug efflux system transporter

CGCCGGGATATCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGAGCTCGGTGGCGTTGGTTGTGGCGTGGCTACTGCGGCGGTGTATTGGGTCATGTTCCTTGCCATGGTTTCTTACATTAAACGCGCCCGCTCCATGCGCGATATTCGTAACGAAAAAGGCACCGCAAAACCCGATCCTGCGGTTATGAAAC  >  NC_000913/1743869‑1744165                                                                                                                                                   |                                                                                                                                                       cgcCGGGATATCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatg                                                                                                                                                    <  1:543888‑M1/151‑5 (MQ=255)  gcCGGGATATCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgc                                                                                                                                                   <  1:833710‑M1/151‑6 (MQ=255)  gcCGGGATATCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGCGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgc                                                                                                                                                   >  2:499263‑M1/1‑146 (MQ=255)   ccGGGATATCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcg                                                                                                                                                  <  1:1261702‑M1/151‑7 (MQ=255)        atatCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcc                                                                                                                                             <  2:247397‑M1/151‑12 (MQ=255)         tatCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcct                                                                                                                                            >  1:1097219‑M1/1‑139 (MQ=255)             tGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgca                                                                                                                                         >  2:1038211‑M1/1‑135 (MQ=255)              gTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaac                                                                                                                                       <  2:730307‑M1/151‑18 (MQ=255)                    ccAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgc                                                                                                                                 <  1:1037034‑M1/151‑24 (MQ=255)                     cAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgcc                                                                                                                                >  2:1116584‑M1/1‑127 (MQ=255)                      aGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccg                                                                                                                               >  2:442863‑M1/1‑126 (MQ=255)                      aGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccg                                                                                                                               <  1:794042‑M1/151‑26 (MQ=255)                      aGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccg                                                                                                                               <  1:731894‑M1/151‑26 (MQ=255)                       ggTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgt                                                                                                                              <  1:460372‑M1/151‑27 (MQ=255)                         ttGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtc                                                                                                                             >  2:525912‑M1/1‑123 (MQ=255)                         ttGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtc                                                                                                                             >  2:375486‑M1/1‑123 (MQ=255)                           gCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagc                                                                                                                          <  1:1185028‑M1/151‑31 (MQ=255)                              cGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccat                                                                                                                       >  1:256768‑M1/1‑118 (MQ=255)                                tAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatc                                                                                                                      >  1:317912‑M1/1‑116 (MQ=255)                                 aaCCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcat                                                                                                                    <  2:204032‑M1/151‑37 (MQ=255)                                  acgagtgTGAAGGTCTGGCAAAAACCAAGCAGGGCATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcatt                                                                                                                   >  2:1168961‑M1/4‑114 (MQ=255)                                  aCCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcatt                                                                                                                   >  1:224265‑M1/1‑114 (MQ=255)                                  aCCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcatt                                                                                                                   >  2:776535‑M1/1‑114 (MQ=255)                                        gtgAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaa                                                                                                             <  2:1013993‑M1/151‑44 (MQ=255)                                        gtgAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgca                                                                                                              >  1:839664‑M1/1‑108 (MQ=255)                                           aaGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacga                                                                                                          <  1:213452‑M1/151‑47 (MQ=255)                                                cTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatc                                                                                                     >  1:1172072‑M1/1‑100 (MQ=255)                                                 tGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcc                                                                                                    >  1:1209167‑M1/1‑99 (MQ=255)                                                   gCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccg                                                                                                  >  1:57826‑M1/1‑97 (MQ=255)                                                    cAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgc                                                                                                 >  2:1195306‑M1/1‑96 (MQ=255)                                                    cAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgc                                                                                                 <  2:1232055‑M1/151‑56 (MQ=255)                                                     aaaaaCCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgct                                                                                                <  2:279685‑M1/151‑57 (MQ=255)                                                          ccAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataa                                                                                           <  1:360016‑M1/151‑62 (MQ=255)                                                           cAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataa                                                                                           >  1:13099‑M1/1‑89 (MQ=255)                                                                cGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagaca                                                                                      >  1:985508‑M1/1‑84 (MQ=255)                                                                    tATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcg                                                                                 >  2:699941‑M1/1‑80 (MQ=255)                                                                    tATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcg                                                                                 >  2:390334‑M1/1‑80 (MQ=255)                                                                    tATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcg                                                                                 >  2:457554‑M1/1‑80 (MQ=255)                                                                          aaTGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaacc                                                                            <  2:410267‑M1/150‑77 (MQ=255)                                                                           aTGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaacctt                                                                          <  1:417570‑M1/151‑79 (MQ=255)                                                                            tGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttc                                                                         >  1:804073‑M1/1‑72 (MQ=255)                                                                                 tttATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacggg                                                                    >  1:878993‑M1/1‑67 (MQ=255)                                                                                   tATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggtt                                                                  >  1:1166667‑M1/1‑65 (MQ=255)                                                                                       ggCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgc                                                              >  2:411601‑M1/1‑61 (MQ=255)                                                                                         ccTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcatcgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcct                                                            <  2:650331‑M1/151‑93 (MQ=255)                                                                                            gctgGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgt                                                          >  1:1204211‑M1/1‑56 (MQ=255)                                                                                              tgGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctg                                                           <  2:55449‑M1/147‑94 (MQ=255)                                                                                                  gAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtattttt                                                    >  1:916191‑M1/1‑50 (MQ=255)                                                                                                   aaCATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttac                                                  >  1:1050250‑M1/1‑49 (MQ=255)                                                                                                   aaCATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttac                                                  <  1:495556‑M1/151‑103 (MQ=255)                                                                                                    aCATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacg                                                 <  2:409389‑M1/151‑104 (MQ=255)                                                                                                      aTCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgca                                               <  1:113692‑M1/151‑106 (MQ=255)                                                                                                       tCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgca                                               <  1:202888‑M1/150‑106 (MQ=255)                                                                                                       tCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgc                                                >  2:724492‑M1/1‑45 (MQ=255)                                                                                                        cccGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcagg                                             <  2:700668‑M1/151‑108 (MQ=255)                                                                                                        cccGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcagg                                             <  2:138034‑M1/151‑108 (MQ=255)                                                                                                          cGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggct                                           >  2:1255558‑M1/1‑42 (MQ=255)                                                                                                           ggTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgcgcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctg                                          >  2:1202178‑M1/1‑41 (MQ=255)                                                                                                             tGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctgg                                         >  2:70752‑M1/1‑39 (MQ=255)                                                                                                              gAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctgga                                        <  2:865936‑M1/150‑113 (MQ=255)                                                                                                               aaCTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagc                                      >  2:889426‑M1/1‑37 (MQ=255)                                                                                                                aCTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcg                                     <  1:831358‑M1/151‑116 (MQ=255)                                                                                                                 cTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcg                                     >  2:1114459‑M1/1‑35 (MQ=255)                                                                                                                 cTATATCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagc                                      >  2:1265588‑M1/1‑35 (MQ=255)                                                                                                                  tataTCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgtt                                   >  1:147552‑M1/1‑34 (MQ=255)                                                                                                                  tataTCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgtt                                   >  2:31824‑M1/1‑34 (MQ=255)                                                                                                                  tataTCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgtt                                   >  1:661184‑M1/1‑34 (MQ=255)                                                                                                                   atatCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttg                                  >  2:554358‑M1/1‑33 (MQ=255)                                                                                                                   atatCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttg                                  >  1:762088‑M1/1‑33 (MQ=255)                                                                                                                   atatCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttg                                  <  1:1067287‑M1/151‑119 (MQ=255)                                                                                                                    tatCTTTATTTATGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgc                                 >  1:944196‑M1/1‑32 (MQ=255)                                                                                                                        tttatttaTGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttatgcaggctggagcgttgcgcc                              >  2:45213‑M1/1‑28 (MQ=255)                                                                                                                         ttatttatGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgcca                             >  1:676059‑M1/1‑27 (MQ=255)                                                                                                                         ttatttatGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgcca                             <  2:1037387‑M1/150‑124 (MQ=255)                                                                                                                         ttatttatGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgcca                             >  2:1149995‑M1/1‑27 (MQ=255)                                                                                                                         ttatttatGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcg                                <  1:515720‑M1/147‑121 (MQ=255)                                                                                                                            tttatGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcc                         >  2:539137‑M1/1‑24 (MQ=255)                                                                                                                               atGGTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgt                      >  1:875978‑M1/1‑21 (MQ=255)                                                                                                                                 ggTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtct                    <  2:1164045‑M1/151‑133 (MQ=255)                                                                                                                                  gTCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtctt                   >  2:370774‑M1/1‑18 (MQ=255)                                                                                                                                   tCATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttc                  >  2:1081986‑M1/1‑17 (MQ=255)                                                                                                                                    cATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcg                 >  2:940146‑M1/1‑16 (MQ=255)                                                                                                                                    cATTTCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcg                 <  1:137658‑M1/151‑136 (MQ=255)                                                                                                                                        tCGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtc               <  1:1254729‑M1/149‑138 (MQ=255)                                                                                                                                         cGGTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtctgg            <  1:285862‑M1/151‑141 (MQ=255)                                                                                                                                          ggTATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcctgtcttcgtctggc           >  1:911472‑M1/1‑10 (MQ=255)                                                                                                                                            tATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataacgacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtctggctg         >  2:914049‑M1/1‑8 (MQ=255)                                                                                                                                            tATGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtctggctg         >  2:1255852‑M1/1‑8 (MQ=255)                                                                                                                                              tGCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtctggctgt        >  2:288165‑M1/1‑6 (MQ=255)                                                                                                                                               gCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtctggctgta       >  1:843072‑M1/1‑5 (MQ=255)                                                                                                                                               gCCTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtctggctgta       >  1:355211‑M1/1‑5 (MQ=255)                                                                                                                                                ccTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtctggctgtaat     >  2:700977‑M1/1‑4 (MQ=255)                                                                                                                                                ccTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtctggctgtaat     <  2:1162251‑M1/151‑148 (MQ=255)                                                                                                                                                 cTGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtctggctgtaatt    >  1:749700‑M1/1‑3 (MQ=255)                                                                                                                                                  tGtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtctggctgtaattt   >  1:73983‑M1/1‑2 (MQ=255)                                                                                                                                                   gtatgcggttcctgcaacgtctgccgtcagccatcattctgcaacgagcatcccgctaataaagacaaggcgcaaccttcacgggttgcgcctgtatttttacgcaggctggagcgttgcgccaatcccgtcttcgtctggctgtaatttc  >  1:178064‑M1/1‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                       CGCCGGGATATCTGTTCTTCCAGGTTGCCCGTAACCAGTGTGAAGGTCTGGCAAAAACCAAGCCGGGTATGGTAATGGGCTTTATCGGCCTGCTGGTGAACATCCCGGTGAACTATATCTTTATTTATGGTCATTTCGGTATGCCTGAGCTCGGTGGCGTTGGTTGTGGCGTGGCTACTGCGGCGGTGTATTGGGTCATGTTCCTTGCCATGGTTTCTTACATTAAACGCGCCCGCTCCATGCGCGATATTCGTAACGAAAAAGGCACCGCAAAACCCGATCCTGCGGTTATGAAAC  >  NC_000913/1743869‑1744165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑