Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	2,312,877	IS5 (–) +4 bp	intergenic (‑128/‑608)	ompC ← / → rcsD	outer membrane porin protein C/phosphotransfer intermediate protein in two‑component regulatory system with RcsBC

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2290113	NA (NA)	52 (0.780)	47/298	0.7	100%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	2312877 =	0 (0.000)					intergenic (‑128/‑611)	ompC/rcsD	outer membrane porin protein C/phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
*	?	NC_000913	= 2312880	0 (0.000)	72 (1.080)	57/298	0.3	100%	intergenic (‑131/‑608)	ompC/rcsD	outer membrane porin protein C/phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
	?	NC_000913	= 3131340	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

CTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGT  >  NC_000913/3131198‑3131490                                                                                                                                               |                                                                                                                                                        cTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATc                                                                                                                                                  >  2:315405/1‑150 (MQ=11)   ggggATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCa                                                                                                                                                 <  2:131437/149‑1 (MQ=31)       aTAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCAt                                                                                                                                           <  2:670291/151‑1 (MQ=35)                tAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCg                                                                                                                                   >  1:686903/1‑150 (MQ=255)                tAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCg                                                                                                                                   >  1:371960/1‑150 (MQ=255)                   aTGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCg                                                                                                                                   >  1:264664/1‑147 (MQ=255)                     ggCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATa                                                                                                                              <  1:953848/150‑1 (MQ=255)                     ggCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATa                                                                                                                              <  1:168577/150‑1 (MQ=255)                     ggCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATAc                                                                                                                             >  1:96060/1‑151 (MQ=255)                      gCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACt                                                                                                                            >  2:473589/1‑151 (MQ=255)                        gaagaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTa                                                                                                                          <  2:814426/151‑1 (MQ=255)                         aagaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTa                                                                                                                          >  1:10301/1‑150 (MQ=255)                                 gTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAac                                                                                                                 >  1:7712/1‑151 (MQ=255)                                  tCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAac                                                                                                                 >  2:62909/1‑150 (MQ=255)                                  tCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAac                                                                                                                 >  1:746433/1‑150 (MQ=255)                                    tAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACAcc                                                                                                              >  2:939074/1‑151 (MQ=255)                                    tAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACATTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCAAAACAcc                                                                                                              >  2:592884/1‑151 (MQ=255)                                             tGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATg                                                                                                    >  1:671434/1‑151 (MQ=255)                                             tGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATg                                                                                                    >  1:989337/1‑151 (MQ=255)                                               aTTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAg                                                                                                  <  1:687697/151‑1 (MQ=255)                                                  cAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCgg                                                                                               >  2:458869/1‑151 (MQ=255)                                                  cAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCgg                                                                                               <  2:988600/151‑1 (MQ=255)                                                  cAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCgg                                                                                               <  1:157940/151‑1 (MQ=255)                                                   aaGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGc                                                                                              >  1:849676/1‑151 (MQ=255)                                                        aTTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGcc                                                                                         >  2:854567/1‑151 (MQ=255)                                                          ttACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCcg                                                                                        >  2:55497/1‑150 (MQ=255)                                                                  gaAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAac                                                                               >  1:942629/1‑151 (MQ=255)                                                                     aaaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACAcc                                                                            <  1:717184/151‑1 (MQ=255)                                                                      aaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCTCCATCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCAAAATGAGCGGCTTGCCGACGATCAACACcg                                                                           <  2:888524/151‑1 (MQ=255)                                                                       aaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACcgc                                                                          >  2:271951/1‑151 (MQ=255)                                                                        aTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACcgcg                                                                         <  1:902853/151‑1 (MQ=255)                                                                          cGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACcgcg                                                                         >  1:122920/1‑149 (MQ=255)                                                                           ggCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAgc                                                                      <  1:211961/151‑1 (MQ=255)                                                                              tCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGcc                                                                   >  1:754401/1‑151 (MQ=255)                                                                              tCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAACGcc                                                                   >  1:99690/1‑151 (MQ=255)                                                                                 aaCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGccacc                                                                >  2:566781/1‑151 (MQ=255)                                                                                  aCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGccacca                                                               <  2:823366/151‑1 (MQ=255)                                                                                   cATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGccacc                                                                >  2:516141/1‑149 (MQ=255)                                                                                   cATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAg                                                              <  1:70643/151‑1 (MQ=255)                                                                                      gaagaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAAt                                                           >  1:22568/1‑151 (MQ=255)                                                                                         gaaatgaaatGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATAcc                                                        >  2:46282/1‑151 (MQ=255)                                                                                          aaatgaaatgACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGGGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATAcc                                                        >  2:735085/1‑150 (MQ=255)                                                                                          aaatgaaatgACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCg                                                       >  2:402923/1‑151 (MQ=255)                                                                                               aaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTcc                                                  <  2:582182/151‑1 (MQ=255)                                                                                               aaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTcc                                                  >  1:843039/1‑151 (MQ=255)                                                                                                aatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTccg                                                 >  1:662081/1‑151 (MQ=255)                                                                                                           cAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTa                                       >  2:568861/1‑150 (MQ=255)                                                                                                                      aaTTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTc                            >  1:845808/1‑150 (MQ=255)                                                                                                                           ccccGCTTATCCGCCCCTTCCCAAAATCGGGTCATACGCTTGGAGATACTTAACGCCAAACCCC‑AGAAAAAGGCGCGTCTGGCCGACAAACAACCCCGCGGGCGCCACCAAAATACCGATCCCCCCCGCCAGTAAACCGGACTTCACACCt                      <  1:315407/151‑1 (MQ=255)                                                                                                                            cccGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCt                      >  2:724210/1‑150 (MQ=255)                                                                                                                                 ttatcccccccTCCCCTAAATCAGGTCCTCCTCTTGGAAATATTTACCCCCAACCACC‑AGGGAAATGGGCGTCTTCCCGCCTACCACCCCCGCGCCCGCCACCAAACTCCCGTTTCCCCCCGCCAGTAAACCGGACTTCACACCTaacaa                 <  1:1005572/141‑1 (MQ=255)                                                                                                                                  tATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAAcc               >  1:570178/1‑151 (MQ=255)                                                                                                                                     cccccccTCCCCAAAACCAGGTCATCCGCTCCGATATACTACAC‑CCAAACCCCAAGGAAAAGGGGCGCCTTCCGGCCGATCACCCCCGCGGGCCCCACAAGAACCCCGATCCCCCCCGCCAGTAAACCGGACTTCACACCTAACAACCACg            <  1:55498/146‑1 (MQ=255)                                                                                                                                      ccccccTTCCCAAAATAAGGTCATCCGTTTCGAGATACTAAACCCCAACCCCC‑AGAAAAATGGGCGGCTTGCCGAAAAAAACCCCCGCGGGCGCCACAAGAACCCCGTTCCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACg            <  1:279316/146‑1 (MQ=255)                                                                                                                                      ccccccTTCCAAAAATCAGGTAATCCGCTCCGAGATACTAACCCCCAAACACC‑AGCAAAATGGGGGCCTCCCCGACGACCAACCCCGCGAGCCCCACAAAAACCCCGCTCCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACg            <  2:7712/146‑1 (MQ=255)                                                                                                                                      cGCACCTCCCCAAAAACAGGTCATCCGCTTGGAGATACTTAACGCAAAACCCC‑AGAAAAAGGGGCGGTTGGCGGACAACCACCCCCGGGAGCCCCACCAAAATACCGATCCCGCCCGCCAGTAAACCGGACTTCACACCTAACAAcc               <  1:713852/147‑1 (MQ=255)                                                                                                                                               ccTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTggtggt  >  1:768867/1‑151 (MQ=255)                                                                                                                                               |                                                                                                                                                        CTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACC‑AGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGT  >  NC_000913/3131198‑3131490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.