| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,916,392 | Δ12 bp | coding (1336‑1347/2757 nt) | barA → | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2916392 | 2916403 | 12 | 55 [0] | [0] 55 | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2916391 | 0 (0.000) | 54 (0.880) | 50/276 | 0.3 | 100% | coding (1335/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| ? | NC_000913 | 2916404 = | 0 (0.000) | coding (1348/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY | |||||
AGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCGGCATTGGTATTCCTGAACGCGATCAATCGCGCTTATTCCAGGCCTTCCGACAGGCTGATGCCAGTATTTCCCGCCGTCATGGTGGCACCGGGCTGGGGCTGGTGATTACACAAAAACTGGT > NC_000913/2916242‑2916534 | aGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTc > 2:85340‑M1/1‑150 (MQ=255) aCGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcggg > 2:973552‑M1/1‑146 (MQ=255) gTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggat > 2:474480‑M1/1‑144 (MQ=255) gTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggat > 2:602281‑M1/1‑144 (MQ=255) gTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggat > 2:643806‑M1/1‑144 (MQ=255) tGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggatac > 2:738385‑M1/1‑143 (MQ=255) gATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggc > 2:290115‑M1/1‑138 (MQ=255) gATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccgg < 1:744398‑M1/149‑12 (MQ=255) gATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccgg < 1:704000‑M1/149‑12 (MQ=255) aaCGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcatt < 1:91692‑M1/150‑16 (MQ=255) cGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTATCCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATGCTGGTAGAAAACCTTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcat < 1:846415‑M1/147‑15 (MQ=255) gTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggta < 1:495338‑M1/151‑20 (MQ=255) gATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtatt > 2:640767‑M1/1‑130 (MQ=255) gATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtat < 2:951998‑M1/150‑21 (MQ=255) cGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaa < 2:399672‑M1/151‑28 (MQ=255) gACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaac < 1:810541‑M1/151‑29 (MQ=255) gCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatc < 1:541363‑M1/149‑35 (MQ=255) aTTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcg > 2:250519‑M1/1‑112 (MQ=255) tACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgc < 1:366338‑M1/150‑41 (MQ=255) cAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttat > 1:441990‑M1/1‑105 (MQ=255) aaTCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattc < 1:162978‑M1/151‑49 (MQ=255) caCTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggcc > 1:12328‑M1/1‑97 (MQ=255) tAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttc > 1:613373‑M1/1‑94 (MQ=255) ggtggGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgac > 1:159445‑M1/1‑88 (MQ=255) gtggGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacagg > 2:568040‑M1/1‑87 (MQ=255) ggAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctg > 1:901097‑M1/1‑83 (MQ=255) aaTTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagt < 1:431898‑M1/151‑76 (MQ=255) aTTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagt > 2:871628‑M1/1‑75 (MQ=255) aaaTTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatt < 1:936711‑M1/150‑79 (MQ=255) aaTTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttc > 1:379515‑M1/1‑71 (MQ=255) tCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttccc < 1:537310‑M1/150‑83 (MQ=255) cACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgc > 1:428654‑M1/1‑67 (MQ=255) aCCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgcc > 1:222866‑M1/1‑66 (MQ=255) cGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgt > 1:96540‑M1/1‑64 (MQ=255) cGAGAATGGCAACATTGATATTCTGGTAAAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggatcccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgt < 2:518120‑M1/151‑88 (MQ=255) gagaATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtc > 1:96267‑M1/1‑63 (MQ=255) agaATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtc > 2:382821‑M1/1‑62 (MQ=255) tGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggt > 1:846274‑M1/1‑58 (MQ=255) gCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtgg < 2:827252‑M1/151‑96 (MQ=255) gCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtgg > 2:435519‑M1/1‑56 (MQ=255) aCATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcac > 1:65828‑M1/1‑53 (MQ=255) tGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccggg > 1:1023893‑M1/1‑49 (MQ=255) tCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctgggg > 2:829015‑M1/1‑43 (MQ=255) tCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctggg < 2:421562‑M1/150‑108 (MQ=255) tGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctggggc > 2:908078‑M1/1‑41 (MQ=255) aGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctggggctggt < 2:686003‑M1/150‑114 (MQ=255) aaaCGTGCGCTGAGTAATACCAAAGGGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgaggccagtatttcccgccgtcatggtggcaccgggctggggctggtgatta < 1:168061‑M1/151‑119 (MQ=255) cGTGCGCTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctggggctggtgattacac > 2:469338‑M1/1‑30 (MQ=255) cgcTGAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctggggctggtgattacacaaaa < 1:85340‑M1/151‑126 (MQ=255) gAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctggggctggtgattacacaaaaac < 1:470950‑M1/149‑128 (MQ=255) gAGTAATACCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctggggctggtgattacacaaaaac < 2:220322‑M1/149‑128 (MQ=255) aCCAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctggggctggtgattacacaaaaactggttaatg < 2:585955‑M1/151‑137 (MQ=255) cAAAGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctggggctggtgattacacaaaaactggttaatga > 2:652215‑M1/1‑13 (MQ=255) aaaGTGCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctggggctggtgattacacaaaaactggttaatgaaa < 2:222457‑M1/151‑140 (MQ=255) gCAGATTcgggataccggcattggtattcctgaacgcgatcaatcgcgcttattccaggccttccgacaggctgatgccagtatttcccgccgtcatggtggcaccgggctggggctggtgattacacaaaaactggttaatgaaatggg > 1:648267‑M1/1‑7 (MQ=255) | AGCGACGTGCCTGATAACGTGATCGGCGACCCGCTGCGATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCGGCATTGGTATTCCTGAACGCGATCAATCGCGCTTATTCCAGGCCTTCCGACAGGCTGATGCCAGTATTTCCCGCCGTCATGGTGGCACCGGGCTGGGGCTGGTGATTACACAAAAACTGGT > NC_000913/2916242‑2916534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |