Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,472,662 IS5 (–) +4 bp pseudogene (2146‑2149/3497 nt) ydbA → pseudogene, autotransporter homolog; interrupted by IS2 and IS30

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1472662 =1 (0.010)85 (1.180) 51/298 0.8 98.8% pseudogene (2146/3497 nt) ydbA pseudogene, autotransporter homolog; interrupted by IS2 and IS30
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region
* ? NC_000913 = 14726651 (0.010)70 (0.970) 52/298 0.7 98.6% pseudogene (2149/3497 nt) ydbA pseudogene, autotransporter homolog; interrupted by IS2 and IS30
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region

Only 100 of 151 total aligned reads displayed.

CGGTGGTGATTGCCGATGGGGTTACGGGTTCTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAACAATGCCAGCATGAACGGCGTGGAGATTAACACGGGCTTTACCGC  >  NC_000913/1472512‑1472812
                                                                                                                                                      |                                                                                                                                                      
tgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                                                                                                        <  2:786436‑M1/1‑1 (MQ=255)
 gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                       >  2:887170‑M1/150‑151 (MQ=255)
 gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                       <  1:722668‑M1/2‑1 (MQ=255)
 gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                       >  2:104364‑M1/150‑151 (MQ=255)
 gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                       >  2:309707‑M1/150‑151 (MQ=255)
 gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                       >  2:384700‑M1/150‑151 (MQ=255)
 gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                       >  2:433682‑M1/150‑151 (MQ=255)
 gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt                                                                                                                                                       <  2:449131‑M1/2‑1 (MQ=255)
 gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct                                                                                                                                                        >  2:223988‑M1/150‑150 (MQ=255)
  cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                                                                                                      >  1:1042106‑M1/149‑151 (MQ=255)
  cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                                                                                                      >  2:574812‑M1/149‑151 (MQ=255)
  cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa                                                                                                                                                      >  2:485472‑M1/149‑151 (MQ=255)
    ggtgATTGCCGATGGGGTTACGGGTTCTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAg                                                                                                                                                     <  1:89602/150‑1 (MQ=255)
    ggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAgt                                                                                                                                                    >  2:954945‑M1/147‑151 (MQ=255)
    ggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAgt                                                                                                                                                    >  1:49540‑M1/147‑151 (MQ=255)
       gATTGCCGATGGGGTTACGGGTTCTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGgga                                                                                                                                                  <  2:137801‑M1/150‑4 (MQ=255)
       gATTGCCGATGGGGTTACGGGTTCTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGgga                                                                                                                                                  <  2:245817‑M1/150‑4 (MQ=255)
       caagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAgtgt                                                                                                                                                  <  2:463528‑M1/7‑1 (MQ=255)
       caagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAgtgt                                                                                                                                                  <  2:378497‑M1/7‑1 (MQ=255)
        aTTGCCGATGGGGTTACGGGTTCTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaag                                                                                                                                                <  2:58639‑M1/151‑6 (MQ=255)
        aTTGCCGATGGGGTTACGGGTTCTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaag                                                                                                                                                <  2:35203‑M1/151‑6 (MQ=255)
        aTTGCCGATGGGGTTACGGGTTCTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGTGTaa                                                                                                                                                <  1:1091234/151‑1 (MQ=255)
           aaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGt                                                                                                                                             <  1:598319‑M1/12‑1 (MQ=255)
                ctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCggg                                                                                                                                         <  2:665997‑M1/16‑1 (MQ=255)
                  gggTTACGGGTTCTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaat                                                                                                                                        <  2:230743‑M1/149‑14 (MQ=255)
                     ttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGtg                                                                                                                                    <  2:519909‑M1/21‑1 (MQ=255)
                       aCGGGTTCTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggg                                                                                                                                 <  2:432862‑M1/151‑21 (MQ=255)
                         ggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAg                                                                                                                               >  2:791553‑M1/126‑151 (MQ=255)
                          gtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAgg                                                                                                                              <  2:5304‑M1/27‑1 (MQ=255)
                              cTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaatt                                                                                                                           >  2:79784‑M1/1‑124 (MQ=255)
                                    tGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcg                                                                                                                    >  1:794491‑M1/1‑118 (MQ=255)
                                     gATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcg                                                                                                                    <  1:1061634‑M1/150‑34 (MQ=255)
                                       tactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGgcagc                                                                                                                   >  1:375569‑M1/112‑149 (MQ=255)
                                        cAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctg                                                                                                                <  2:185605‑M1/151‑38 (MQ=255)
                                        cAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctg                                                                                                                <  2:1087333‑M1/151‑38 (MQ=255)
                                           gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGaac                                                                                                             >  2:978668‑M1/108‑151 (MQ=255)
                                           gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGa                                                                                                               >  2:269250‑M1/108‑149 (MQ=255)
                                           gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGa                                                                                                               >  2:69197‑M1/108‑149 (MQ=255)
                                           gCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgact                                                                                                             >  2:335472‑M1/1‑111 (MQ=255)
                                                gCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc                                                                                                        <  1:271801‑M1/151‑46 (MQ=255)
                                                 ttcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTc                                                                                                       <  1:174226‑M1/50‑1 (MQ=255)
                                                   cactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCa                                                                                                      >  1:1118045‑M1/100‑150 (MQ=255)
                                                   cactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCa                                                                                                      >  2:935709‑M1/100‑150 (MQ=255)
                                                   cactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCa                                                                                                      >  1:808375‑M1/100‑150 (MQ=255)
                                                   aCAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt                                                                                                     <  2:497120‑M1/151‑49 (MQ=255)
                                                     aGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc                                                                                                   <  1:1118444‑M1/151‑51 (MQ=255)
                                                      tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACgg                                                                                                  <  2:305279‑M1/55‑1 (MQ=255)
                                                        aTCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt                                                                                                <  2:720357‑M1/151‑54 (MQ=255)
                                                          ggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTAt                                                                                              >  1:978801‑M1/93‑151 (MQ=255)
                                                             gaaggtaagttgatgactcatgatgacccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcgccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATgtc                                                                                           >  2:334982‑M1/90‑151 (MQ=255)
                                                                   aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCgg                                                                                      >  1:32441‑M1/84‑150 (MQ=255)
                                                                       tgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTAcc                                                                                  <  2:508861‑M1/71‑1 (MQ=255)
                                                                       aTGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                                                                                 >  1:163288‑M1/1‑83 (MQ=255)
                                                                         gAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg                                                                               >  1:473502‑M1/1‑81 (MQ=255)
                                                                           gactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGt                                                                             <  1:1020682‑M1/76‑1 (MQ=255)
                                                                            actcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGtt                                                                            <  2:257155‑M1/77‑1 (MQ=255)
                                                                             ctcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGtt                                                                            <  1:483615‑M1/77‑1 (MQ=255)
                                                                              gTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt                                                                          >  1:631966‑M1/1‑76 (MQ=255)
                                                                                aacaacGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt                                                                        >  1:389219‑M1/1‑74 (MQ=255)
                                                                                 acaacGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc                                                                       <  1:177070‑M1/151‑79 (MQ=255)
                                                                                     gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAgc                                                                   <  2:261165‑M1/86‑1 (MQ=255)
                                                                                        tAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt                                                                 >  1:138752‑M1/1‑66 (MQ=255)
                                                                                        ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGAAGCGcc                                                                <  1:158313‑M1/89‑1 (MQ=255)
                                                                                            gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCgg                                                              >  2:202191‑M1/59‑149 (MQ=255)
                                                                                            agcagcGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat                                                             >  1:434558‑M1/1‑62 (MQ=255)
                                                                                                 atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTg                                                       <  2:491574‑M1/98‑1 (MQ=255)
                                                                                                    aGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaat                                                    <  1:994800‑M1/151‑98 (MQ=255)
                                                                                                        cATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagc                                                <  1:43609‑M1/151‑102 (MQ=255)
                                                                                                         agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTaa                                               >  2:281474‑M1/46‑151 (MQ=255)
                                                                                                         agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTa                                                <  2:720869‑M1/105‑1 (MQ=255)
                                                                                                         aTTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcc                                               <  1:800296‑M1/151‑103 (MQ=255)
                                                                                                          gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAAc                                              >  2:817147‑M1/45‑151 (MQ=255)
                                                                                                           tATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcct                                              >  1:827599‑M1/1‑47 (MQ=255)
                                                                                                           atgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAACa                                             >  2:579765‑M1/44‑151 (MQ=255)
                                                                                                            aTGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGGTAGggaaggtgcgaataagcggggaaattcttctcggctgactcggtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccgtgaatcagcctat                                            >  1:576625‑M1/1‑46 (MQ=255)
                                                                                                               caaacatgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAACAATGc                                         >  2:291217‑M1/40‑151 (MQ=255)
                                                                                                                 gACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctattt                                          >  2:874526‑M1/1‑41 (MQ=255)
                                                                                                                   catgatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAACAATGCCAGc                                     <  2:360309‑M1/116‑1 (MQ=255)
                                                                                                                   cTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagacc                                     >  1:202426‑M1/1‑39 (MQ=255)
                                                                                                                      gatctcatatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAACAATGCCAGCAt                                   >  2:610685‑M1/33‑150 (MQ=255)
                                                                                                                        cGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttc                                <  2:1048102‑M1/151‑118 (MQ=255)
                                                                                                                        cGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgttt                                 >  1:45822‑M1/1‑34 (MQ=255)
                                                                                                                           tGCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttctt                              <  1:142850‑M1/150‑120 (MQ=255)
                                                                                                                           catatcagggacttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAACAATGCCAGCATGAACgg                             >  2:131500‑M1/28‑151 (MQ=255)
                                                                                                                            gCCGGATGTGCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttc                             <  1:103984‑M1/150‑121 (MQ=255)
                                                                                                                            atatcagggtcttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAACAATGCCAGCATGAACGGc                            >  1:208410‑M1/27‑151 (MQ=255)
                                                                                                                              cGGATGTGCCGAAGCCCAATACGGTTAGggaaggcgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgcc                          >  1:515929‑M1/1‑28 (MQ=255)
                                                                                                                                   gtgCCGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccattta                     <  1:1074917‑M1/151‑129 (MQ=255)
                                                                                                                                      ccGAAGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaagg                  <  2:831410‑M1/151‑132 (MQ=255)
                                                                                                                                       ttgttcgcaccttccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAACAATGCCAGCATGAACGGCGTGGAGATTa                  <  1:722759‑M1/135‑1 (MQ=255)
                                                                                                                                          aGCCCAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgtt              <  2:743773‑M1/151‑136 (MQ=255)
                                                                                                                                             ccAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatc           >  1:893220‑M1/1‑13 (MQ=255)
                                                                                                                                              cAATACGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatcc          <  1:1061668‑M1/151‑140 (MQ=255)
                                                                                                                                                   tccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAACAATGCCAGCATGAACGGCGTGGAGATTAACACGGGCttt       >  1:716323‑M1/4‑149 (MQ=255)
                                                                                                                                                   cGGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcattcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagt     <  1:917626‑M1/151‑145 (MQ=255)
                                                                                                                                                    ccTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAACAATGCCAGCATGAACGGCGTGGAGATTAACACGGGCTTTAc     >  2:483250‑M1/3‑150 (MQ=255)
                                                                                                                                                     gTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagttt   <  2:532530‑M1/151‑147 (MQ=255)
                                                                                                                                                      ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttt  >  1:927004‑M1/1‑4 (MQ=255)
                                                                                                                                                      ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttt  >  1:443440‑M1/1‑4 (MQ=255)
                                                                                                                                                      ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttt  >  1:1003600‑M1/1‑4 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
CGGTGGTGATTGCCGATGGGGTTACGGGTTCTGGACTGATCAAGCAGGGCGACAGCATCAATGTTGAAGGTATGAACGGTAACAACGGTAATAGCAGCGAAGTGCATTATGGCGACTATACGTTGCCGGATGTGCCGAAGCCCAATACGGTTAGTGTAACGTCGGGAAGTGATGAGGCTGGTGGCAGCATGAACAACCTCAACGGCTATGTCGTCGGTACCAACGTTAACGGCAGCGCCGGGAAGCTGAAGGTTAACAATGCCAGCATGAACGGCGTGGAGATTAACACGGGCTTTACCGC  >  NC_000913/1472512‑1472812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.