| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 925901 = | 63 (0.840) | 10 (0.130) +C |
8/296 | 10.9 | 16.1% | noncoding (71/88 nt) | serW | tRNA‑Ser |
| ? | NC_000913 | = 1097399 | 42 (0.560) | intergenic (+570/+166) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
CACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCTG‑TCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC > NC_000913/1097255‑1097488 | cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTg < 2:154990/149‑1 (MQ=11) ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGCGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACtcgctt < 1:110048/150‑1 (MQ=18) cacttccggTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACtcgcttc < 1:301479/141‑1 (MQ=16) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGg‑ggggggggattagaccccccc > 1:563394/1‑135 (MQ=11) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGAATGAAtcgcttctc > 2:365774/1‑148 (MQ=16) cGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACtcgcttcgct < 2:904813/150‑1 (MQ=33) gTCTGTCCAACTGGCAGTCGCCAGTTGTCGATCCTCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTtcgctc < 2:821952/149‑1 (MQ=9) tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCt < 1:401035/149‑1 (MQ=33) ccAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGA‑GGGGGGGGTTGACTCCCTTCGCTCGCCCcg‑cg > 2:733236/1‑151 (MQ=255) cagcTGGCTGTCGCTAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCt < 1:687894/144‑1 (MQ=18) aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCTCTCCCCCTG‑Cggg > 2:301551/1‑151 (MQ=18) aCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGc < 2:1035288/151‑1 (MQ=33) cTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTTACTCGCTTCGCTCGCGCGC‑CGGGc > 2:242643/1‑150 (MQ=255) cTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTGACTCGCCTCGCTCGCCCCC‑CGGGGAGccc > 2:33649/1‑151 (MQ=255) tGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGC‑GGGGGGGGGTGACTCCGTTCCCACGCCCTG‑CCGGccgac > 2:505049/1‑146 (MQ=11) tGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTTAATCCCCTCGCccccccccccgggcaccc > 1:728126/1‑138 (MQ=1) gTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGccc < 1:963978/149‑1 (MQ=33) gTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCg < 1:878111/150‑1 (MQ=33) ccAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGCGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTGAATCACTTAGTCCGCCCCG‑CTGGCGGCCCGccc > 1:451807/1‑147 (MQ=11) aGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGGTTAATCGCCTCGCTCCCCCCT‑CGCGCAGccccc > 2:788505/1‑143 (MQ=11) aGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTg < 1:1153711/151‑1 (MQ=33) tGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGAATCTCTTCGCTCGCCCCG‑CGCGCTTCCCCCTCAcagag > 1:622840/1‑146 (MQ=11) gTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGtt < 2:510993/151‑1 (MQ=33) cGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGATGACACGCCTCGCCCCCCCTGCCGGGCAccccccccctt > 2:521486/1‑138 (MQ=11) ccccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGA‑GGGGGGGGTTGACTCGCTTCCCTCCCCCTC‑CGGGGAGCCCCCCCCCTGCGTTCACg > 1:857816/1‑149 (MQ=11) ccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTTACTCGCCTCGCTCGCCCCG‑CGGGGAGCCCCCCCCCCGCGTTCACCGTCt > 2:830135/1‑151 (MQ=11) ccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCt < 2:615472/151‑1 (MQ=31) cGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGACG‑GGGGGGGATTGAGTCGCCTCGCTCCCCCTT‑GGGACAAACCCCCCCCCGCGTTCACGGTc > 2:1008719/1‑149 (MQ=11) cGGGTCTTCTCATCCCCCCCGTCGGTCCAATATACG‑AAAAAAAAGCCCGTGCTTCCGTCCGTGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCTG‑Tcc < 1:114458/150‑1 (MQ=11) cGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGATGACTCGCCTCCCTCCCCCCC‑CGGGCAGCCCCCTCCCCTCGTTCaacggccgtcc > 2:142739/1‑140 (MQ=11) cGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCTG‑Tcc < 2:77109/150‑1 (MQ=31) cGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAGA‑GGGGGGGGTTGAATCCCCTCCCCCCCCCCC‑CTGGCCACCCCCTCACCGCGGTCCCCgtccg‑tcc > 1:318388/1‑150 (MQ=11) gggCTTCTCCTCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGCGCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCTG‑TCCAAc < 1:748347/151‑1 (MQ=9) gCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCTG‑TCCAACTg < 2:567149/151‑1 (MQ=31) cATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAGA‑GGGGGGGGTTGACTCCCCCCGCTCGCCCTC‑CGGGGCGCCCGCTCCCGGCGGTGTCGgtccg‑tccccc > 1:663913/1‑140 (MQ=11) aTCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGTTTACTCGCCTTGCCCCCCCCG‑CGGGCAACCCGCTCACCGGGGTCACGGTTTG‑TCCCACTTGCTGt > 2:842007/1‑149 (MQ=11) ccccccGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGGGTTAATCCCCTCCCTCCCCCCT‑CGGGCCGCCCCCCCACTCCGTTCACGGTCTG‑GCCCACCGGCTGTCGcc > 2:536085/1‑151 (MQ=11) cccccGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCTG‑TCCAACTGGCTGTCGCCa < 2:1123110/151‑1 (MQ=31) gCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCTG‑TCCAACTGGCTGTCGCCAGTTGTCGAAcc < 2:199589/150‑1 (MQ=31) gCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCTG‑TCCAACTGGCTGTCGCCAGTTGTCGAAcc < 1:383580/150‑1 (MQ=31) cAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAGAGGGGGGGGGTTGAATCGCTTCGCTCGCCCCG‑CGGGGGGGCCGCCCACTGCGTTTACCGGCTGTTCCAAC‑GGGTGGTGCCCGTTGTTGAAccc > 1:372579/1‑151 (MQ=2) ataCG‑AAAAAAAAGGCCGTACTTTCGTACGGGCTCTTCTTTAAAAAAGGCCGTGC‑TGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCTG‑TCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGt < 1:82577/150‑1 (MQ=11) ataCG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCTG‑TCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTc < 2:316820/151‑1 (MQ=31) | CACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTG‑CGGGCAGCCCGCTCACTGCGTTCACGGTCTG‑TCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC > NC_000913/1097255‑1097488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |