| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,628,616 | IS2 (+) +5 bp | coding (319‑323/2244 nt) | yfgF ← | cyclic‑di‑GMP phosphodiesterase, anaerobic |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2070271 | NA (NA) | 18 (0.510) | 17/292 | 1.3 | 94.6% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 2628620 | 1 (0.030) | coding (319/2244 nt) | yfgF | cyclic‑di‑GMP phosphodiesterase, anaerobic | |||||
| * | ? | NC_000913 | 2628616 = | 1 (0.030) | 17 (0.490) | 15/292 | 1.6 | 94.3% | coding (323/2244 nt) | yfgF | cyclic‑di‑GMP phosphodiesterase, anaerobic |
| ? | NC_000913 | 2996361 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
ACACCGACCAGATTTTCTCTGCTCGCCAGTAATCCTACAAATGCAGCAAACTGGAAAAGTATCAGAAACAGCGTTGCAGGAAACACAATCTGCCAGAATATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTAAAGACCCTGTAACCGCCCCAACAGAGAATGATAATGATAATAAAATTAGCCGTTAATGATAGCGTTTCGTAAAAACCCAGCTCTGCATATTTGCGGACAAAAATCCCTAAGGCGATCCCTGGCAATGCCGCCCAGCTGAAAA > NC_000913/2628466‑2628763 | agcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccag > 2:3992268‑M1/151‑151 (MQ=255) ccGACCAGATTTTCTCTGCTCGCCAGTAATCCTACAAATGCAGCAAACTGGAAAAGTATCAGAAACAGCGTTGCAGGAAACACAATCTGCCAGAATATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCgggg > 2:2250582/1‑149 (MQ=255) gaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGGAGTaa > 1:178510‑M1/145‑151 (MQ=255) accttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGGAGTAAAg > 1:3396670‑M1/143‑151 (MQ=255) ccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGGAGTAAAGa > 1:233176‑M1/142‑151 (MQ=255) gcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGGAGTAAAGACCCTGTAAcc > 1:899404‑M1/132‑151 (MQ=255) gcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGGAGTAAAGACCCTGTAAcc < 1:3160638‑M1/20‑1 (MQ=255) cgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGGAGTAAAGACCCTGTAACCg > 1:3172503‑M1/131‑151 (MQ=255) gCCAGTAATCCTACAAATGCAGCAAACTGGATAAGTATCAGAAACAGCGTTGCAGGAAACACAATCTGCCAGAATATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatct > 2:1800265‑M2/1‑131 (MQ=255) cAAATGCAGCAAACTGGAAAAGTATCAGAAACAGCGTTGCAGGAAACACAATCTGCCAGAATATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaat > 1:352516‑M2/1‑118 (MQ=255) ccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGGAGTAAAGACCCTGTAACCGCCCCAACAGAGAATgataatgataat < 2:2180128‑M1/47‑1 (MQ=255) caAACTGGAAAAGTATCAGAAACAGCGTTGCAGGAAACACAATCTGCCAGAATATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaa > 1:2830515‑M2/1‑109 (MQ=255) ggAAAAGTATCAGAAACAGCGTTGCAGGAAACACAATCTGCCAGAATATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataag < 1:1306542‑M2/150‑48 (MQ=255) aaaaGTATCAGAAACAGCGTTGCAGGAAACACAATCTGCCAGAATATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtg < 1:3272855‑M2/150‑50 (MQ=255) aaaaGTATCAGAAACAGCGTTGCAGGAAACACAATCTGCCAGAATATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtg < 1:1649962‑M2/150‑50 (MQ=255) atcgccccccacggaaatacctgcggcagcgggcttgtaatgggtaaagtgataaaagatgtctgaaaatataggggcaaatccaGGAGAAAAGACCCTGTAACCGCCCCAACAGAGAATGATAATGATAATAAAATTAGCCGTTAAt > 2:2753469‑M1/86‑148 (MQ=255) cAGGAAACACAATCTGCCAGAATATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttt < 2:2401966‑M2/149‑71 (MQ=255) gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGGAGTAAAGACCCTGTAACCGCCCCAACAGAGAATGATAATGATAATAAAATTAGCCGTTAATGATAGCGTTTCGTa < 2:2211736‑M1/77‑1 (MQ=255) cggcggcagggggcttgtaatgggttaagtgataacagatgtctggaaatataggggaaaaccaaGGAGTAAAGACCCTGTAACCGCCCCAACAGAGAATGATAATGATAATAAAATTAGCCGTTAATGATAGCGTTTCGTAAAAACCCa > 2:1691181‑M1/66‑150 (MQ=255) tCTGCCAGAATATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgg < 2:2109977‑M2/151‑85 (MQ=255) ggcagcgggtttgtaatgggttaagtgataaaagatgtcgggaaatataggggaaaatccgGGATTAAAGCCCTTTTAACCGCCCCAACAGAGAATGATAATGATAATAAAATTAGCCGTTAATGATAGCGTTTCGTAAAAACCCAGctc > 2:1789729‑M1/62‑150 (MQ=255) ggcagcgggtttgtaaggggtaaagagataacagatgtcgggaaatatagggaaaaatccaGGAGAAAAGACCTTTTAACCGCCCCAACAGAGAATGATAATGATAATAAAATTAGCCGTTAATGATAGCGTTTCGTAAAAACCCAGctct > 1:2757621‑M1/62‑151 (MQ=255) aaTATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaac < 2:2824160‑M2/148‑90 (MQ=255) cGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattg > 2:192265‑M2/1‑53 (MQ=255) ggtttaagtaataacagatgtctgaaaatataggggaaaacccaGGAGTAAAGCCCCTGTAACCGCCCCAACAGAGAATGATAATGATAATAAAATTAGCCGTTAATGATAGCGTTTCGTAAAAACCCAGCTCTGCATATTTGCGGACaaa > 2:2713092‑M1/45‑151 (MQ=255) gggAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggacccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgat > 1:3721252‑M2/1‑49 (MQ=255) gAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtct < 1:4101209‑M2/151‑105 (MQ=255) gtgaaaacagatgtcgggaaatatgggggaaaatccaGAAGAAAACCCCCTGTAACCGCCCCAACAGAGAATGATAATGATAATAAAATTAGCCGTTAATGATAGCGTTTCGTAAAAACCCAGCTCTGCATATTTGCGGACAAAAAtccca > 1:1488253‑M1/38‑150 (MQ=255) aaaCGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggc < 1:1201450‑M2/151‑111 (MQ=255) aaCGGGTCTCACTGTGTGAAGCGTGGTTACGATGGGGAGAAAACCCCCTGTAACCGCCCCAACAGAGAATTTTATTGTTAATAAAATTAGCCGCCAACGATAGCGTTTCGTAAAAACCCACCTCTGCCCACTCGCGGCCAATAACCCCTac < 1:2918723/151‑2 (MQ=255) aaaacagaggtcggaaaatatgggggaaaatccaGGAGAAAAGCCCCTGTAACCGCCCCAACAGAGAATGATAATGATAATAAAATTAGCCGTTAATGATAGCGTTTCGTAAAAACCCAGCTCTGCATATTTGCGGACAAAAATCCCt > 1:1383440‑M1/35‑148 (MQ=255) gggTATCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccgg < 1:3588913‑M2/150‑114 (MQ=255) aTCACCATGTGAAACGTTGTTACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaa < 2:2303938‑M2/150‑118 (MQ=255) ttACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacac < 1:488781‑M2/151‑138 (MQ=255) tACGCCGGGGAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacac < 1:2067393‑M2/150‑138 (MQ=255) aaatccaGGATTAAAGCCCCTGTAACCGCCCCAACAGAGAATGATAATGATAATAAAATTAGCCGTTAATGATAGCGTTTCGTAAAAACCCAGCTCTGCATATTTGCGGACAAAAATCCCTAAGGCGATCCCTGGCAATGCCGCCCAGc > 2:3153843‑M1/8‑149 (MQ=255) ggAGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaa < 2:645960‑M2/148‑144 (MQ=255) | ACACCGACCAGATTTTCTCTGCTCGCCAGTAATCCTACAAATGCAGCAAACTGGAAAAGTATCAGAAACAGCGTTGCAGGAAACACAATCTGCCAGAATATACGCTGGGAAATTAAACGGGTATCACCATGTGAAACGTTGTTACGCCGGGGAGTAAAGACCCTGTAACCGCCCCAACAGAGAATGATAATGATAATAAAATTAGCCGTTAATGATAGCGTTTCGTAAAAACCCAGCTCTGCATATTTGCGGACAAAAATCCCTAAGGCGATCCCTGGCAATGCCGCCCAGCTGAAAA > NC_000913/2628466‑2628763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |