| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 381,211 | Δ1,383 bp | [yaiX]–[yaiX] | [yaiX], insC1, insD1, [yaiX] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 381211 | 382593 | 1383 | 48 [0] | [0] 47 | [yaiX]–[yaiX] | [yaiX], insC1, insD1, [yaiX] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 381210 | 0 (0.000) | 43 (1.040) | 39/286 | 0.2 | 100% | pseudogene (51/417 nt) | yaiX | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase |
| ? | NC_000913 | 382594 = | 0 (0.000) | pseudogene (279/282 nt) | yaiX | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase | |||||
GGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA > NC_000913/381061‑381358 | ggCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATT > 2:158992‑M1/1‑150 (MQ=255) cGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagttt < 2:188024‑M1/151‑17 (MQ=255) ttACTGGTACGTACTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgcc > 1:325597‑M1/1‑129 (MQ=255) gtacgtacTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcact > 1:597837‑M1/1‑123 (MQ=255) acgtacTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactac > 2:207816‑M1/1‑121 (MQ=255) acgtacTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcacta < 2:385690‑M1/150‑30 (MQ=255) cgtacTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactacc < 1:30249‑M1/151‑32 (MQ=255) cTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccgg < 1:662408‑M1/149‑34 (MQ=255) ttGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggacc > 2:34787‑M1/1‑115 (MQ=255) gtgCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccct < 2:440358‑M1/151‑39 (MQ=255) gcgcCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctg < 2:70771‑M1/150‑40 (MQ=255) gcCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaat < 1:20913‑M1/151‑43 (MQ=255) ccTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaat < 2:28757‑M1/150‑43 (MQ=255) aaaTATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataa < 2:65218‑M1/149‑45 (MQ=255) gTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgac > 2:177662‑M1/1‑94 (MQ=255) aCTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgg > 1:218119‑M1/1‑87 (MQ=255) gCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccg < 1:671749‑M1/151‑77 (MQ=255) aTAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgata < 2:516971‑M1/151‑80 (MQ=255) aaaaCATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataac > 1:329023‑M1/1‑70 (MQ=255) aaaaCATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataa < 1:590499‑M1/150‑81 (MQ=255) aaCATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataaca > 1:301183‑M1/1‑68 (MQ=255) gCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttca < 2:601495‑M1/150‑89 (MQ=255) cGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttc > 2:307091‑M1/1‑52 (MQ=255) gCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatc > 1:595533‑M1/1‑48 (MQ=255) cTTCCGCTTCAATAACCGCATTTTTAATCGCGGTGGCAAAACCAATTccctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatca < 2:1744‑M1/150‑104 (MQ=255) tCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacc > 1:235561‑M1/1‑39 (MQ=255) cAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacct > 1:54754‑M1/1‑38 (MQ=255) cAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacct < 1:461439‑M1/151‑114 (MQ=255) cAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacct < 2:310087‑M1/151‑114 (MQ=255) tAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggt > 1:261229‑M1/1‑35 (MQ=255) tAACCGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaacggaccctgaataacggcaccatgacaaatacgggtattagcgccgataacaacttcacctgcagtttcatcaataattacctgg > 2:145968‑M1/1‑35 (MQ=255) ccGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctg > 1:437266‑M1/1‑32 (MQ=255) ccGCATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctg > 2:46811‑M1/1‑32 (MQ=255) cATTTTTAATCTCGTTGGCAAAACCAATTacctatcaggcattttgcgccaatcactaccggaccctgaataacggctccatgataaatacgtgtattcgcgccgataacatcttcacctgcagtttcatcaataattacctggtct < 2:428447‑M1/147‑119 (MQ=255) cATTTTTAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaa < 2:326120‑M1/151‑123 (MQ=255) ttttAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatct > 2:122433‑M1/1‑26 (MQ=255) ttAATCTCGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatctg < 1:125868‑M1/150‑127 (MQ=255) cGGTGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatctgaatatt < 2:6573‑M1/149‑133 (MQ=255) tGGCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatctgaatatttttct > 2:541330‑M1/1‑14 (MQ=255) ggCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatctgaatatttttctc > 2:312648‑M1/1‑13 (MQ=255) ggCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatctgaatatttttctc < 1:158997‑M1/151‑139 (MQ=255) gCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattgcctggtctgcaatctgaatatttttct < 1:177667‑M1/149‑138 (MQ=255) gCAAAACCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatctgaatatttttctct < 1:87583‑M1/151‑140 (MQ=255) aCCAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatctgaatatttttctctttaac > 1:39627‑M1/1‑7 (MQ=255) ccAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatctgaatatttttctctttaaca < 2:108858‑M1/151‑146 (MQ=255) ccAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatctgaatatttttctctttaaca < 1:303431‑M1/151‑146 (MQ=255) cAATTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatctgaatatttttctctttaacat < 1:11576‑M1/151‑147 (MQ=255) aTTacctatcaggcagtttgcgccaatcactaccggaccctgaataacggcaccatgacaaatacgggtattcgcgccgataacaacttcacctgcagtttcatcaataattacctggtctgcaatctgaatatttttctctttaacatta < 1:171074‑M1/151‑149 (MQ=255) | GGCTGTTCATCCAGACGATGATTACTGGTACGTACTTGTGCGCCTAAATATGCCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA > NC_000913/381061‑381358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |