New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	= 347397	24 (0.850)	21 (0.750)	18/584	0.6	62.8%	intergenic (+14/‑444)	LY180_01680/LY180_01685	hypothetical protein/flagellin
	?	CP006584	363805 =	1 (0.040)					intergenic (‑32/‑256)	LY180_01770/LY180_01775	outer membrane phosphoporin protein E/gamma‑glutamyl kinase

ATAGCCGAACGAGCAGCTCAGAGAGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGTAAATTTTGGCATCAGTACATTGAGAAGAAAACGCGTTAATTGATGGTAATCTTAACTATATCAAGCGTTTGATAAAGACATATTTTGATACCTGGCCATGTGGCAGATATTGCTAATAA  >  CP006584/347100‑347684                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                aTAGCCGAACGAGCAGCTCAGAGAGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGT                                                                                                                                                                                                                                                                                                 >  1:9127‑M1/1‑298 (MQ=255)    gCCGAACGAGCAGCTCAGAGAGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCt                                                                                                                                                                                                                                                                                              <  1:3695/298‑1 (MQ=31)        aaCGAGCAGCTCAGAGAGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagc                                                                                                                                                                                                                                                                                          >  1:46655‑M1/1‑291 (MQ=255)                   cagggggTTTTGACTTCATGCTGCTAAACGCCCCGATGACTCAACTAACATGTTGGCTTGCGGGCGTTCATGCACAGAAACAAGGTTGGGACAAGCAATTCCAGGCTAACACAGTCAGAACTCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAAGTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAg                                                                                                                                                                                                                                                                               <  2:145916/292‑1 (MQ=11)                                         gctAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAgat                                                                                                                                                                                                                                                         >  1:322612/1‑298 (MQ=255)                                                          ttCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATa                                                                                                                                                                                                                                        >  1:196223/1‑298 (MQ=255)                                                                 aaCATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAata                                                                                                                                                                                                                                 <  1:150314/298‑1 (MQ=255)                                                                      gTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTa                                                                                                                                                                                                                            <  1:190259/298‑1 (MQ=255)                                                                                  gacgtaattgtcagaaacaagGTTGAGACAAGCTCTTGCAAGCTAACACCGTGGCAAAACGAAACATACTCTCAACAGTTCGCGTAGGCATGGAAGTTTTGCGGCATTCTCGCTACACAATAAGAAGGGAGGAATTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTGACGCTTTGGCGAAAGTATGAGGGGATCTTTCAGTattcagcgggagagccccgttgaaaacaggaaattttttaacctgagattgttaaagatatattacagattaataatattc                                                                                                                                                                                                                <  2:301498‑M1/288‑82 (MQ=255)                                                                                               gAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCCTTGGGGAAATTATGAGGGGATCTCTCAGTTCTTTTCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGTTTTTTCTGTGTGATAAGTAATATATTATGGTACAAGGATTTTTTTTAAttca                                                                                                                                                                                                   >  2:295656/1‑295 (MQ=17)                                                                                                                     ttCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaa                                                                                                                                                                             <  1:235186‑M1/298‑117 (MQ=255)                                                                                                                          ggCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATg                                                                                                                                                                        >  1:283486/1‑298 (MQ=255)                                                                                                                                  caGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGGCGCTGCAACCCTACTAGCTCACAATTTCTTCACACATGGTTACGCTTTGGGGAAATTATGAGGGCATCTCTCAGTGCTTTGCATAAAGCACCGTCTTACACGACCCTCAGCAGATGATTTTTCTGCGTGCTACCTAATATTTTATGGTAATAGGTTTATTCTTAATCTCTTTATGACATTGAAATGGAACGAACTaacaagata                                                                                                                                                                >  2:53198/1‑296 (MQ=18)                                                                                                                                            tCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAg                                                                                                                                                      >  1:27557/1‑298 (MQ=255)                                                                                                                                            tCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGCTTTGCGGCATTCTGGCTACACTATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgatattgttaacgatatattacatattaataatattcttaaacagagttaatcacttaaatgtgaattaaaagcgtaaacaactaccgttacgct                                                                                                                                                      >  2:141413‑M1/1‑159 (MQ=255)                                                                                                                                                              aGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAGCCAAATGTGTACTATTTg                                                                                                                                    >  1:58597/1‑298 (MQ=255)                                                                                                                                                                     ttAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATCACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCACTattcagcgggacagccacgttgaacacaggcaattttttcacctgagattggtaaacatatattacagattaataatcttcttaaaatgtggtaatttattaaatctgtaataaaatcgtaaccaactgcccacaggcttgttgactcatcccaacaacacgcc                                                                                                                             >  2:267224‑M1/1‑134 (MQ=255)                                                                                                                                                                     ttAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagcgccgttgaaaacaggaaaggttttaaactgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaatacaagcgtaaacaactgccgccaggctttctgatcccgcgcaaaaaaaccac                                                                                                                             >  2:88649‑M1/1‑134 (MQ=255)                                                                                                                                                                     ttAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaagcgtaaacaactgccgctaggcttgctgatcccgcgcaacaaaacgcc                                                                                                                             >  1:114426‑M1/1‑134 (MQ=255)                                                                                                                                                                               aaGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaagcgtaaacaactgccgctaggcttgctgatcccgcgcaacaaaacgccatgctttgct                                                                                                                   <  1:324076‑M1/298‑175 (MQ=255)                                                                                                                                                                                 gTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaagcgtaaacaactgccgctaggcttgctgatcccgcgcaacaaaacgccatgctttgcttg                                                                                                                 >  1:231964‑M1/1‑122 (MQ=255)                                                                                                                                                                                      gCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGTAAATTTTGGCATc                                                                                                            <  1:133250/298‑1 (MQ=255)                                                                                                                                                                                            ttCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaagcgtaaacaactgccgctaggcttgctgatcccgcgcaacaaaacgccatgctttgcttgcagatggttgg                                                                                                      <  2:93651‑M1/298‑188 (MQ=255)                                                                                                                                                                                                    acacAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATACTTAATATTTTATGGTAATAGGATTATTCTTAATAACTATATGGCTTGGAAATTTAACGAAATGACAGGACAGGTACAATAGCCAAATAAGTACTATTTGCAAAGCAATGTAAATTTTTGCCTCaagtaagttagaaa                                                                                              >  2:89664/1‑285 (MQ=37)                                                                                                                                                                                                    acacAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAACCAAATGTGTACTATTTGCAACGCAATGTAATATTTGGACTCAGTAAATTGagaag                                                                                              >  2:160681/1‑298 (MQ=255)                                                                                                                                                                                                            aCAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaagcgtaaacaactgccgctaggcttgctgatcccgcgcaacaaaacgccatgctttgcttgcagatggttggcaaccgacgacagtcc                                                                                      >  1:269176‑M1/1‑95 (MQ=255)                                                                                                                                                                                                              aaGGGAAGACTTACTCGTAGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaacgtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaactctgtaatacaagcgtaaacaactgccgctaggcttgctgatcacgcgcaacaaaccgcactgctttgtttcacgatggttgtcaacagaaaacagacctg                                                                                    >  2:35130‑M1/1‑93 (MQ=255)                                                                                                                                                                                                                  aaaGACTTATTCGTGTGTGAAACCCAACTAGCTCAAAATGTATTCACACATGGTTACGATTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGTAAATTTTGGCATCAGTACATTGAGAAGAAAACGCGTTAAtt                                                                                <  2:268596/297‑1 (MQ=255)                                                                                                                                                                                                                    aGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaagcgtaaacaactgccgctaggcttgctgatcccgcgcaacaaaaccccattctttgcttgcagatggttggcaacccacgaaagtcctgctaaaa                                                                              >  2:65604‑M1/1‑87 (MQ=255)                                                                                                                                                                                                                      aCTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagcccagttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaagcgtaaacaactgccgctaggcttgctgatcccgcgcaacaaaacgccatgctttgcttgcagatggttggcaaccgacgacagtcctgctaaaacg                                                                            <  1:302829‑M1/298‑214 (MQ=255)                                                                                                                                                                                                                               tGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTCTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATAAGTCCCTGAGAAGATGATTTTTATGCGTAATAACTAATATTTTATGGTAATAGGATTATTCTTAATCAATATATGGCCGGGACATGTAACGAAATGACAGGAAAGGTACAATAGCCAAAAGTGTATTATTTGCAACGCCAAGTAAATTTTTGCATCAGAACAATGAGAAAAAAAACAGATAATTAGTGGTaacatta                                                                   >  2:176223/1‑293 (MQ=37)                                                                                                                                                                                                                                     cAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGGCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAAGAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGTAAATTTTGGCATCAGTACATTGAGAAGAAAACGCGTTAATTGATGGTAATCTTAACtata                                                             <  1:88622/298‑1 (MQ=255)                                                                                                                                                                                                                                      aaCCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaagcgtaaacaactgccgctaggcttgctgatcccgcgcaacaaaacgccatgctttgcttgcagatggttggcaaccgacgacagtcctgctaaaacgttcgtttgatatcatt                                                            >  1:329494‑M1/1‑69 (MQ=255)                                                                                                                                                                                                                                         ccTACTAGCTCACAATTTATTAGACCAGTGTTTCTATTTGGGGGAGTGATTAGTGGATCTTTCAGTGTTTTGCCTAAAGAATACAGTTTAACGTCCATGATAAGATGGTTTTTTGGCGTGATAACTTATATTTTATGGTAATAGGATTATTCTTGATCACTATATGGGGTGGAAATGTATCGAAAGGACAGGACAGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGTAAATTTTGGCATCAGTACATTGAGATGAAAACGCGTTAATTGATGGTAATCTTAACTATATCaa                                                         <  2:322612/298‑1 (MQ=255)                                                                                                                                                                                                                                              taGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaa                                                                                                                                                                             >  2:136747‑M1/1‑61 (MQ=255)                                                                                                                                                                                                                                              taGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaa                                                                                                                                                                             <  1:136747‑M1/177‑117 (MQ=255)                                                                                                                                                                                                                                                  tCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGTAAATTTTGGCATCAGTACATTGAGAAGAAAACGCGTTAATTGATGGTAATCTTAACTATATCAAGCGTTTGAt                                                >  1:33313/1‑298 (MQ=255)                                                                                                                                                                                                                                                              cacacaTGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGATTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGTCGTGGAAATGTAACGACATGACAGGCCCGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGGAAATTTTGACATCAGTACATTGAGAAGAAAACGCGGTAATTTATGGTAATATTAACTATATAAAACGTTTGTTAAAGAAATAttt                                    >  2:211547/1‑298 (MQ=255)                                                                                                                                                                                                                                                                    tGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGTAAATTTTGGCATCAGTACATTGAGAAGAAAACGCGTTAATTGATGGTAATCTTAACTATATCAAGCGTTTGATAAAGACATATTTTGATAc                              >  1:92465/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                   gAAATTATGAGGGGATCTCTCAGTattcagcgggagcgccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatctattaaatctgtaataaaagcgtaaacaactcccgctaggcttgctgatcccgcgcaccaaaacgcaatgctttgcttgcagatggttggcaaccgaccacagtcctgctaaaacgttcgtttgagatcatttctcctaaaattcaatggcagagaatcatgagtgacagcaagacg               >  2:59439‑M1/1‑24 (MQ=255)                                                                                                                                                                                                                                                                                      attagtagggggtCTCTCAGGtttcatggggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaagcgtaaacaactgccgctaggcttgctgatcccgcgcaacaaaacgccatgctttgcttgcagatggttggcaaccgacgacagtcctgctaaaacgttcgtttgatatcatttttcctaaaattgaatggcagagaatcatgagtgacagccagacgctg            <  2:46655‑M1/292‑278 (MQ=255)                                                                                                                                                                                                                                                                                       ttATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaagcgtaaacaactgccgctaggcttgctgatcccgcgcaacaaaacgccatgctttgcttgcagatggttggcaaccgacgacagtcctgctaaaacgttcgtttgatatcatttttcctaaaattgaatggcagagaatcatgagtgacagccagacgctgg           >  1:241268‑M1/1‑20 (MQ=255)                                                                                                                                                                                                                                                                                        tATGAGGGGATCTCTCAGTattcagcgggagagccccgttgaaaacaggaaagtttttaacctgagattgttaaagatatattacagattaataatattcttaaaatgtggtaatttattaaatctgtaataaaagcgtaaacaactgccgctaggcttgctgatcccgcgcaacaaaacgccatgctttgcttgcagatggttggcaaccgacgacagtcctgctaaaacgttcgtttgatatcatttttcctaaaattgaatggcagagaatcatgagtgacagccagacgctggt          >  1:183333‑M1/1‑19 (MQ=255)                                                                                                                                                                                                                                                                                        tATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGTAAATTTTGGCATCAGTACATTGAGAAGAAAACGCGTTAATTGATGGTAATCTTAACTATATCAAGCGTTTGATAAAGACATATTTTGATACCTGGCCATGTGGCAGATAtt          <  1:218145/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                                gATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGTAAATTTTGGCATCAGTACATTGAGAAGAAAACGCGTTAATTGATGGTAATCTTAACTATATCAAGCGTTTGATAAAGACATATTTTGATACCTGGCCATGTGGCAGATATTGCtaataa  <  1:211547/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                                gATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGTAAATTTTGGCATCAGTACATTGAGAAGAAAACGCGTTAATTGATGGTAATCTTAACTATATCAAGCGTTTGATAAAGACATATTTTGATACCTGGCCATGTGGCAGATATTGCtaataa  <  1:58365/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                ATAGCCGAACGAGCAGCTCAGAGAGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCTTTGCATAAAGCACAGTCTTATACGTCCCTGAGAAGATGATTTTTCTGCGTGATAACTAATATTTTATGGTAATAGGATTATTCTTAATCACTATATGGCGTGGAAATGTAACGAAATGACAGGACAGGTACAATAGCCAAATGTGTACTATTTGCAACGCAATGTAAATTTTGGCATCAGTACATTGAGAAGAAAACGCGTTAATTGATGGTAATCTTAACTATATCAAGCGTTTGATAAAGACATATTTTGATACCTGGCCATGTGGCAGATATTGCTAATAA  >  CP006584/347100‑347684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.