New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	= 2891935	NA (NA)	34 (1.210)	30/584	0.1	97.2%	intergenic (+12/+249)	LY180_13750/LY180_13755	hypothetical protein/transcriptional regulator
	?	CP006584	= 3268631	1 (0.040)					coding (88/1119 nt)	LY180_15515	hydrogenase 2 small subunit

AACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGC‑GGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTCACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGAAAAAAGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAAGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCT  >  CP006584/2891647‑2892231                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                         aaCGTGCAGTTCAAGGCGTTTTGATATCATGCTGCTAATCTCCGTGATGTTTCAACGAACGTGTTGGCTTGGGGGCGTTCATGTTCAGAAACAAGGTTTGGACAAGCACTTCACGTGTAACACAGTCAGCAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGC‑GGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGATGGGATCTCTCAGTGCACAGt                                                                                                                                                                                                                                                                                                 <  2:307578/298‑1 (MQ=11)            cAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACGCGCAACAGTTCGCTTCGGCATGGAAGTTTTGC‑GGCATTCTGGCCACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGCTTACGCTTACGGGAAATTATGAGGGGTACTATCAGTGCACAGCCCTACTTTTca                                                                                                                                                                                                                                                                                      >  2:249063/1‑297 (MQ=11)                                 agcacatccgccTGAGTCTGCAACTAACTATTTGGGTTGCGGGCGTTCCAGCTCAGAAACAAGGTTGGGACACGCCCTTCCAGGCTAACACAGTCAAAAATCGAAACGTACTCTAACCAGTTCGCTTAGGAATGGAAGTTTTGC‑GGCAGTCTGGCTACACAATAACAAGGGAAGACTTACTCGGGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGcc                                                                                                                                                                                                                                                                 <  2:221581/288‑1 (MQ=14)                                                        cTAACTCGTTGGCTTGCGGGCGTTCATGCGCAGAAACAAGGTTGGGACAAGCACTTCCAGGGTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGC‑GGCATTATGGCTAAACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAAt                                                                                                                                                                                                                                          <  2:154954/298‑1 (MQ=255)                                                           aCATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGTGACAAGCACTTCCAGGCTAACACAGTCATAAATCGAACCGTCCTCTCCACAGTTCGCTTAGGCCTGTCAGTTTTGC‑TGCATTCTAGCTCCACCACAACAAGGCAAGACTTACTCGTGGCTGCCACCCTCCTACCTCACAATTTCTTAACACATGTTTACGCTTTGGGGAACTTATGAGGAGATCTCTAATTGAACAGTCCTCATTTTCCTGCGGAGAATACACGCCGGTCACTTCACAAGTAAGGCACCCAATACa                                                                                                                                                                                                                                       >  2:255453/1‑298 (MQ=14)                                                             aTGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGC‑GGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACAtt                                                                                                                                                                                                                                     >  1:233363/1‑298 (MQ=255)                                                             aTGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGC‑GGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACAtt                                                                                                                                                                                                                                     >  1:245411/1‑298 (MQ=255)                                                                             tttcatcagcAGAAACAGGGTTGGGACAGGCACTTCCAGGGTAAAACATGCAGACATCGAAACGTACTCTCAACAGTTCGATTAGGCATGGGAGTTTTGC‑GGCATTCAGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCGTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACAGTTACTCGCGTCAGCAat                                                                                                                                                                                                                     <  2:108099/289‑1 (MQ=18)                                                                                    cataGAAAAAAGGTCGGGCAAATCACTCCCAGGCCAAAACAGTTAGATATCGAAACGTACTCGCAACAGTTCGCTGAGGCATGGAATTTTTGC‑GGCTGTCTGGCTACACAATAACAAAGGAAGACTTTCTCGTGGCTGCAACCCTACTCGCTCAAAATTTATTCACACGTGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGaaa                                                                                                                                                                                                              <  2:245411/295‑1 (MQ=18)                                                                                            cAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGC‑GGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTtcat                                                                                                                                                                                                      <  1:9834/298‑1 (MQ=255)                                                                                                                        acacAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGC‑GGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTAAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTAATCGCGCCAGCAATGATGAAAAGGTACAGCAATCTCTCCAGAAATGAAAgatcaatc                                                                                                                                                                          >  2:209390/1‑291 (MQ=18)                                                                                                                                        aaaCGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGC‑GGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACaa                                                                                                                                                          <  1:30546/298‑1 (MQ=255)                                                                                                                                           cGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGC‑GGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATc                                                                                                                                                       >  1:168404/1‑298 (MQ=255)                                                                                                                                              atcttaaaCAGTTCGCTTGGGCAAGGAAGTTCTGC‑GGCTGTCTGGCTACACAAGAACAAGGTAAGACTTCAGCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTTGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGACACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATg                                                                                                                                                    <  2:117556/292‑1 (MQ=37)                                                                                                                                                         ttCGCTTAGGCATGGAAGTTTTGC‑GGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTaa                                                                                                                                         <  1:136370/298‑1 (MQ=255)                                                                                                                                                               agtggattgaggtgttGC‑GGCATTCTGTCTACACTATAACAAGGTGTGACTTACTCGTGGCTGCAACGCTACGAGATCAAAATTTATGCACACAGGTTTACGCGTTGGGTAAATGAGGAGGGGATCGCTCAGTTCACACTCCTGATGTTCCTGATGAGATATCACGCACGCAAATTCACAGGTCCGGCAACCAAGACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGAGACATTCACAAATCATGCCAGTTTTTAATTCACt                                                                                                                                   <  2:184351/284‑1 (MQ=255)                                                                                                                                                                        gaGTTTTGCTGGCATTCTGGCTAAACATAAACAAGGGAATACTGACTTAGGTCTGATACCCTACATGCTCAAATTTTATTCACACATTGTTCAGCTTTGGGGAAATTATGAGGGAATCGCTCACTGCACAGTCCTGAGTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATTATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTATTTCACTGTTATTTa                                                                                                                           <  2:271600/297‑1 (MQ=255)                                                                                                                                                                        aaGTTTTGC‑GGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTCACTGTTATTTaa                                                                                                                          <  1:259574/298‑1 (MQ=255)                                                                                                                                                                                         tGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGCAATTATGAGGGGATCTCTCAGTGCACATTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAAACAATACATTTACTCGAGTAAGCAATGATTAAACGGTTCAGCAAATTCTCCACAACATACAGTTAATGGTCCGATACATTAACAAATCATGCCAGCTTTAAATTCACCTTTATTTAACGAAATAATTTTTTgg                                                                                                          >  2:32987/1‑297 (MQ=25)                                                                                                                                                                                         tGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTCACTGTTATTTAAGGAAATTAATTTCTGt                                                                                                          <  1:144265/298‑1 (MQ=255)                                                                                                                                                                                              acacAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTAATAGCTCAAAAGTTATTCACACATGCTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCCTAAACCTGATTTTCCTGATGAGCAACTACGCACGCCACTTCACAGGTACGTCAACCAATACATTTACTCGCGTCAACAATGATGCAACGGTGAAACAAATTATCAAGAAATGACAGTTAATTCAACGAAACATTAACAAATCATGCAAGTTTTTAATTCACTGCTTTTTAAGGAAATTAATTTCTGAACTGc                                                                                                     >  2:140209/1‑298 (MQ=25)                                                                                                                                                                                                acaATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTCACTGTTATTTAAGGAAATTAATTTCTGTAATGCAg                                                                                                   <  1:249063/298‑1 (MQ=255)                                                                                                                                                                                                                aCTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTCACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGAAAAAAGATGTCATc                                                                                   >  1:324256/1‑298 (MQ=255)                                                                                                                                                                                                                         tGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTCACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGAAAAAAGATGTCATCGACACTAGt                                                                          >  1:263536/1‑298 (MQ=255)                                                                                                                                                                                                                                        taGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCAGACAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTACTTCACTGTTATATAAGGAAATTAATTTCTGTAATGCAGGAAAAAAGATGTCATCGACACTAGTGACGATGACATGtga                                                           >  2:314972/1‑298 (MQ=255)                                                                                                                                                                                                                                                  tttATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTCACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGAAAAAAGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGtt                                                 <  1:209390/298‑1 (MQ=255)                                                                                                                                                                                                                                                               ggTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACCGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTCAATGTTATTTAAGGAAATTAATTTCTGACATGCAGGAAAAAAGATGTCATCGACCCTATTGACGATGACATGTGATGACAATGTTTATcgcacaaaag                                    >  2:97398/1‑291 (MQ=255)                                                                                                                                                                                                                                                                        ttGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTCACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGAAAAAAGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAAGAGCAAtgagtg                           >  1:224322/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                            tctctcAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTCACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGAAAAAAGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAAGAGCAATGAGTGAGTCGCGGCGGATCAGtttt       <  1:97398/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                                 taGTGCACAAGCCTGATTTTTCTGAGGAGAAAACACGCGCGCCACTGCAAAGGTACGGCAACCAATGATTTTACTCGCGTCAGAAATGGTGAAACGGTTTATCAATTTCTCCAGCAATGACTGTTAAGGCGCCGAGACATTCACAAATCATGCCATTTTTTAATTCACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGAAAAAAGATGTCATCGACACTAGTGACGATGACATGTGATGGCAAGGTTTATCGCGAAAGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCt  <  2:46090/297‑1 (MQ=255)                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                         AACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGC‑GGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCACAGTCCTGATTTTCCTGATGAGAAACCACGCACGCCACTTCACAGGTACGGCAACCAATACATTTACTCGCGTCAGCAATGATGAAACGGTTCATCAAATTCTCCAGCAATGACAGTTAATGCGCCGATACATTCACAAATCATGCCAGTTTTTAATTCACTGTTATTTAAGGAAATTAATTTCTGTAATGCAGGAAAAAAGATGTCATCGACACTAGTGACGATGACATGTGATGACAATGTTTATCGCGAAAGAGCAATGAGTGAGTCGCGGCGGATCAGTTTTCCGCT  >  CP006584/2891647‑2892231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.