New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	= 1435631	1 (0.040)	27 (0.960)	23/586	0.3	96.4%	coding (690/951 nt)	LY180_06790	universal stress protein E
	?	CP006584	= 1666594	NA (NA)					intergenic (‑107/+75)	LY180_07840/LY180_07845	hypothetical protein/porin

GATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGATATACGTTCCATAGAAGCGAATTTCTGGTCGTGAACCTAAAATGCTTTCACCCACTTTCAATGCATGCCAGAGTGTCGTTTTATAAGCCGATTCATTTAGTGTTACACCCTGCTGAGTTTTGTTCTG  >  CP006584/1666305‑1666890                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                         gATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGc                                                                                                                                                                                                                                                                                                  >  1:13954/1‑298 (MQ=31)   ttCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTa                                                                                                                                                                                                                                                                                                >  1:214778/1‑298 (MQ=31)                 tgttTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAGATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCAt                                                                                                                                                                                                                                                                                  >  1:203783/1‑298 (MQ=37)                                                                    agagTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATAGCGAGTTCGCACATCTTGTTCTCTGATTAGTGATTTTACGCGAAACCCTTTGCTCATATGACTAGCAGTGTAACCACATTAACTTAATGATTTTTACCTAAATCAATAGGGGATTCATCAATGCGAGGCTACCGCACCGCCCGTTAAAAAACCTTTTTTAAATCCTGAACGACCTAACTACTTAACTAAAATCGAt                                                                                                                                                                                                                               >  2:119193/1‑298 (MQ=14)                                                                          tttaattgcaGTAATGCGTGGCATGTCAACGTTAGGCTGTTTAATCGGTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGATCATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCGTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTaccac                                                                                                                                                                                                                         <  2:322242/289‑1 (MQ=18)                                                                                                         ttAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACt                                                                                                                                                                                          >  1:326949/1‑298 (MQ=255)                                                                                                             gCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTc                                                                                                                                                                                      >  1:92413/1‑298 (MQ=255)                                                                                                                gTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCttt                                                                                                                                                                                   <  1:136014/298‑1 (MQ=255)                                                                                                                         ttttAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTtctc                                                                                                                                                                          >  1:57914/1‑298 (MQ=255)                                                                                                                                            gctatttGGTATAGTGGTTCGTGTAAAATGTGGATTTCTAACATCTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTTATCATATGACAATATGTGTATCTATCTTAACTTAATGATTTTTTCCACAATCATTAGGGGATTCATCAGTGCGAGGCTACCTCACCGCCCCATAAAAATCCTTTTTTAACTCCTGACATACACAACTCCTTAACTAAAATAGATTACTACCAGACTTCCGCCTTGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGAt                                                                                                                                                       <  2:13954/293‑1 (MQ=25)                                                                                                                                                     tAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTa                                                                                                                                              >  1:233268/1‑298 (MQ=255)                                                                                                                                                                     aaaTATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGatat                                                                                                                              >  1:177152/1‑298 (MQ=255)                                                                                                                                                                      aaTATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGAtata                                                                                                                             >  1:137754/1‑298 (MQ=255)                                                                                                                                                                               ttCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGATATACGTTCCATa                                                                                                                    >  1:300915/1‑298 (MQ=255)                                                                                                                                                                                      aTCTTGTTGTCTGATTATTGATTTTTCGCGAAACAATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAACTTCCCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGACTCTTGATATAAGTTCCAAAAAAACGa                                                                                                             >  2:72045/1‑298 (MQ=37)                                                                                                                                                                                       tCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGATATACGTTCCATAGAAGCGaa                                                                                                            >  1:66783/1‑298 (MQ=255)                                                                                                                                                                                                        tGATTTTTCGGGAAACGATTTGAACATATGAAACGATGTGTATCCACCTTAACTTAATGAGTTTTACCAAAATCATTAGGGGATTCATCAGTGCTCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATAAACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGATATACGTTCCATAGAAGCGAATTTCTGGTCGTGAACCt                                                                                           <  2:143953/298‑1 (MQ=255)                                                                                                                                                                                                                       ccATTTGATAATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTATGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGATATACGTTCCATAGAAGCGAATTTCTGGTCGTGAACCTAAAATGCTTTCAccc                                                                            <  2:124916/298‑1 (MQ=255)                                                                                                                                                                                                                           ttGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCACCATAAAAAACCTTTTTTAAATCCTGACCTACACAACTCATTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATCAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTAGTTATCCAGAATATTGATATACGTTCCATAGACGCGAATTTCTGGTCGTGAACCCAAACTTCTTTCAACAACtt                                                                        >  2:271444/1‑298 (MQ=39)                                                                                                                                                                                                                               tCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCCCCGCCCCATAAAAACCCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTCCCGCCTGCATGCCGGCCCTAAACTCGTCTTCGCTGTTCCCATTAAACTTAAAATTCGATTATTCGTTATCCAAAATCTTGATAATAGTTCCGTAAATGAGAATTTCCGGTAGTAACACTAAATTACTTTATCCCACTATCac                                                                    >  2:115712/1‑297 (MQ=37)                                                                                                                                                                                                                                                              taaTGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGATATACGTTCCATAGAAGCGAATTTCTGGTCGTGAACCTAAAATGCTTTCACCCACTTTCAATGCATGCCAGAGTGTCGTTTTATAAGCCGAt                                     <  1:133513/298‑1 (MQ=255)                                                                                                                                                                                                                                                                   aTTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGATATACGTTCCATAGAAGCGAATTTCTGGTCGTGAACCTAAAATGCTTTCACCCACTTTCAATGCATGCCAGAGTGTCGTTTTATAAGCCGATTCAtt                                <  1:201499/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                            tcatcaGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGATATACGTTCCATAGAAGCGAATTTCTGGTCGTGAACCTAAAATGCTTTCACCCACTTTCAATGCATGCCAGAGTGTCGTTTTATAAGCCGATTCATTTAGTGTTACACCCTGCTGAGTTTTg       <  1:72045/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                               tcaGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGATATACGTTCCATAGAAGCGAATTTCTGGTCGTGAACCTAAAATGCTTTCACCCACTTTCAATGCATGCCAGAGTGTCGTTTTATAAGCCGATTCATTTAGTGTTACACCCTGCTGAGTTTTGTTc    >  1:288424/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                               tcaGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGAGTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGATATACGTTCCATAGAAGCGAATTTCTGGTCGTGAACCTAAAATGCTTTCACCCACTTTCAATGCATGCCAGAGTGTCGTTTTATAAGCCGATTCATTTAGTGTTACACCCTGCTGAGTTTTGTTc    <  1:119193/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                                 aGTTCGCTGCTACCAGACCGCCCCATAAAAAACCTTTTTTAAATCCTGAAATTAGTAAGTCCTTAACTAAAGTAGTTTCCCACCGTACTGCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTTATTAAATTTAAAATTCGATTAGTCTGTATCCAGAATATTGATATACGTTACATAGAAGCGAAGTTCTGGTCGTGAACCTAAAATGCTTTCACCCACTTTCGATGCATGCCAGAGTGTCGTTTTATAAGCCGATTCATTTAGTGTTACACCCTGCTGAGTTTTGTTCTg  <  2:326949/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                         GATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCGCGGCTACCGCACCGCCCCATAAAAAACCTTTTTTAAATCCTGACATACACAACTCCTTAACTAAAATAGATTACCACCAGACTTCCGCCTGGATGCCGGCCATAAACTCGTCTTTGCTGTTCTCATTAAACTTAAAATTCGATAATTCGTTATCCAGAATATTGATATACGTTCCATAGAAGCGAATTTCTGGTCGTGAACCTAAAATGCTTTCACCCACTTTCAATGCATGCCAGAGTGTCGTTTTATAAGCCGATTCATTTAGTGTTACACCCTGCTGAGTTTTGTTCTG  >  CP006584/1666305‑1666890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.