New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	= 2253835	4 (0.140)	16 (0.600)	16/556	0.7	78.4%	coding (52/414 nt)	LY180_10760	hypothetical protein
	?	CP006584	= 2255646	5 (0.190)					coding (842/1284 nt)	LY180_10775	tail protein

GTCCAGCACCTCCGCCTATATTCCCGGCAAACTGAGAAAAGTTTGTAGCTTCCTGCCAGCTTAATAATTCGCGACCACCATCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTAATAGCGGCCTGAACAAACGCAGTAGTCGCAATCCGCGTGGTGTTATTTCCTGCGGCAGGCGTCGGCGCTTTTGGTTCTCCGGTA  >  CP006584/2255353‑2255924                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                       gtCCAGCACCTCCGCCTATATTCCCGGCAAACTGAGAAAAGTTTGTAGCTTCCTGCCAGCTTAATAATTCGCGACCACCATCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACcttc                                                                                                                                                                                                                                                                                    >  1:83295‑M2/1‑294 (MQ=255)                         agtcaaaCTGACAAAAGCTTGTAGCATCCTGCCAGCGTACTAAGTCGGGACCACAATCTGCACCTCGCACGATCTACCAGACGCGAATGACATCACCGCGAGATTCGGGTAGTACCCGCGAAGGAAACATTTTCGCCATAACAGTGTAATCATAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGATGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGTAGCACcttctcccaaaccaacgtttatgaaaat                                                                                                                                                                                                                                                            >  2:268705‑M2/4‑270 (MQ=255)                                 tGAGAAAAGTTTGTAGCTTCCTGCCAGCTTAATAATTCGCGACCACCATCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCca                                                                                                                                                                                                                                                    <  1:309063/298‑1 (MQ=255)                                              tAGCTTCCTGCCAGCTTAATAATTCGCGACCACCATCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactgg                                                                                                                                                                                                                                       <  1:35362‑M2/298‑50 (MQ=255)                                                gctgcgtcacagcttaataATTCGCGACCACCCTTCGCACCTCGCCCGGCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCTAAGGAAACACTTTCGCCATCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggca                                                                                                                                                                                                                                     >  2:39928‑M2/10‑247 (MQ=255)                                                        ccAGCTTAATAATTCGCGACCACCATCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggcatcatctcc                                                                                                                                                                                                                             >  1:102663‑M2/1‑239 (MQ=255)                                                           gCTTAATAATACACGACCACCATCTGCACCTCGCCCGTCATACCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggcatcatctccggt                                                                                                                                                                                                                          >  1:211353‑M2/1‑236 (MQ=255)                                                                ataatTCGCGACCACCATCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggcatcatctccggttttta                                                                                                                                                                                                                     <  1:264005‑M2/298‑68 (MQ=255)                                                                    ttCGCGACCACCATCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggcatcatctccggtttttattca                                                                                                                                                                                                                 <  1:310239‑M2/298‑72 (MQ=255)                                                                             accaTCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggcatcatctccggtttttattcagggggatgc                                                                                                                                                                                                        >  1:139905‑M2/1‑218 (MQ=255)                                                                                       ccTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCAAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggcatcatctccggtttttattcagggggatgctcatgcttat                                                                                                                                                                                              >  1:171439‑M2/1‑208 (MQ=255)                                                                                             ccATCATCCCAGAAACGAAGGGAATACCCGTGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGGCCAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCGGTCGATTAAAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggcatcatctccggtttttattcagggggatgctcatgcttattggcta                                                                                                                                                                                        >  2:155017‑M2/1‑202 (MQ=255)                                                                                                        gACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAAtggtg                                                                                                                                                                             >  1:186908/1‑298 (MQ=255)                                                                                                                                             aGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggcatcatctccggtttttattcagggggatgctcatgcttattggctatgtacgcgtgtcaacaaatgaccagaatacggaattgcagcgtaacgc                                                                                                                                        <  1:63930‑M2/298‑145 (MQ=255)                                                                                                                                               agaAGGAAACCCTTTAACCAGCCAAGGTCAATCAAAGGAAAAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACAAGCTGTCGATTACAGAATTGGGCATTGCCGCGGAGAGCCAGAAGAACGGAACGACAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggcatcatctccggtttttattcagggggatgctcatgcttattggctatgtacgcgtgtcaacaaatgaccagaatacggaattgcagcgtaacgcgc                                                                                                                                      >  2:63930‑M2/2‑152 (MQ=255)                                                                                                                                                 aaaGAAACACTTTCGACAGCACAGGATAAGCAGAGGCAGAAACATGCACCCCGTTACACTTCAAAAACACGATAATGGAACAGCGGTCGATTACAGTAATTGGCATTGCCGAGGAGGGCCAGAAGAACGGAACGCCAAGAGCTGGAGCACcttctcccaaaccaacggttatgaaaatgcagggataacgggcaactggcatcatctcctgtttttattcagggggatgctcatgctgattggctatgtacgcgtgtcaacaaatgaccagaatacggaagtgcagcgtaacgcgctg                                                                                                                                    >  2:27094‑M2/1‑150 (MQ=255)                                                                                                                                                        cacTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggcatcatctccggtttttattcagggggatgctcatgcttattggctatgtacgcgtgtcaacaaatgaccagaatacggaattgcagcgtaacgcgctggagtgcg                                                                                                                             <  1:222652‑M2/298‑156 (MQ=255)                                                                                                                                                                  aGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCg                                                                                                                   >  1:206316/1‑298 (MQ=255)                                                                                                                                                                                               cGCCCCGTTAAACTTCAAAGACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTGATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTa                                                                                      <  1:183460/298‑1 (MQ=255)                                                                                                                                                                                                              cAAAAACACCGTACTGGACCAGGTGTCGAGTACAGTATTTGGCAGTGCCGCGAGGGGCCAGAAGAACGGAACGCGAATAGCTGGAGCACcttctcccaaaccaacgtttatgaaaatgcagggagaacgggcaactggcagcatctccggtttttattcagggggatgctcatgcttattggctatgtacgcgtggcaacaaatgaccagaatacggaattgcagcgtaacgcgctggagtgcgcaggatgtgagctgatttttgaggacaaaatcagcggcacgaagtccgacaggc                                                                       >  2:120082‑M2/1‑89 (MQ=255)                                                                                                                                                                                                                                    cTGTCGATTACAGTATTTTGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTTGAGCACcttctcccaaaccaacgtttatgaaaatgcagagataacgggcaactggcatcatctccggtttttattcaggtggatgctcatgcttattggctatgtacgcgtgtcaacaaatgaccagaatacggaattgcagcgtaacgcgctggagtgcgcaggatgtgagctgatttttgaggacaaaatcagcggcacgaagtccgacaggccgggactgaaaaaactgctcag                                                 >  1:86519‑M2/1‑67 (MQ=255)                                                                                                                                                                                                                                                                                   aaggtgctccgCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTGTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTAATAGCGGCCTGAACAAACGCAGTAGTCGCAATACGCGTGGTGTTATTTCCTGCGGCAGGCGTCGGCGCTTTTGGTTCTCCGGTa  >  1:315754/11‑298 (MQ=255)                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                       GTCCAGCACCTCCGCCTATATTCCCGGCAAACTGAGAAAAGTTTGTAGCTTCCTGCCAGCTTAATAATTCGCGACCACCATCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTAATAGCGGCCTGAACAAACGCAGTAGTCGCAATCCGCGTGGTGTTATTTCCTGCGGCAGGCGTCGGCGCTTTTGGTTCTCCGGTA  >  CP006584/2255353‑2255924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.