New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP006584 | 3379202 = | 1 (0.040) | 41 (1.460) | 34/586 | 0.1 | 97.6% | intergenic (+70/‑172) | LY180_16040/LY180_16045 | membrane protein/membrane protein |
? | CP006584 | = 3672183 | NA (NA) | coding (474/477 nt) | LY180_17575 | membrane protein |
CAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTCTGTTTTTTAATTCAGGAGGCGTTCTGCGGGAGAATTGCCAACCGATGCCAGCCATTACACTGAAAAAAAGTGCATATTCAACCATTAACT > CP006584/3671900‑3672475 | cagcTCAGGGCGTTTTGTTATCATGCGGCTAATCGCCCTGATGCTTCAACTAAAATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAAt < 2:164019/298‑1 (MQ=18) ggcTCAGGGCGTTTTGCGTTCATGCTTCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATc < 2:1691/297‑1 (MQ=16) gcTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCg > 1:1691/1‑298 (MQ=34) cTGATGCTTCAACAAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACAAATGGCTACGCTTTGGGGAAATTATGAGGGGATATCTCAGAGCTGTGCACTACTCGGGCCGACAAAATC‑AGTACAAGCCTGGGGCTaaaaa > 2:79858/1‑298 (MQ=255) tGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGa > 1:303674/1‑298 (MQ=255) gggCGTTCATGCTCAGAAACAAGGTGGGGACAAGCACTTCCAGGCTAACACAGTCATAAATAGAAACGTACGCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAACTTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGTATCTCTCAGAGCTGTGCACTAATCGGTCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACaaa < 2:260525/298‑1 (MQ=255) aaGCACTTCCAGGCTAACACAGTAAGAAATCGAAACGTACTCTCAACAGTTAGCTTAGGCATGGAAGTATTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAAGCATACTAGCTCAAAAGTTATTCACACATGGTTACGCTTTGGGGACATTCTGAGGGGATATCTCATAGCTGTGCGCTAATCGGGACGACAAAATC‑AGTCCACAGCTGAGGACAAAAAGGGGAAAAATAACGTGAAAGACAAACAACCGTAACAAAGAAATTTAGGATATTTGccgta > 2:335770/1‑295 (MQ=17) aaGCAATTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGGTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAGCAAGGGAAGACTTACTCGTAGCTGCAACCCTACTAGCTCAAAATTTATTCACAAATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGc < 1:159396/298‑1 (MQ=255) aattCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGACATGGAATTATTGCGGCATTCTGGCGCCACAGTAACAAGGGAAGACTTACACGTGGCAGCAACCCTACTAGCACAAAATTTATTCACACATGGTTACGCTTTGGGGATATTATGCGGAGATCGCTCAGCGCTGTTCACTAATCGGGCCGACAAAATCGTGTGC‑AGGCGGCGGCCCAAACGGGACAAAATTCAGGGGAAGCAAGACAAACGTAAGAATGAACTTTGGGATATATTcaggaaaac > 2:263965/3‑290 (MQ=14) cTAACACAGTCAGAAATCGAAACGTAGTCTCACCAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCGCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTtct < 1:335892/298‑1 (MQ=255) acaGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGga < 1:213757/298‑1 (MQ=255) aGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTCCGGCCAAAAAGGGGAAAAATTCAGAGGAAGCCAGACAAACGTCAGAAAAAAAGTTCGGATATTTTCCATCAACGCTGATTTCCCTGGATAAata > 2:227872/1‑298 (MQ=255) aCGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGa > 1:242715/1‑298 (MQ=255) gTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGaaa < 1:79858/298‑1 (MQ=255) ttagtccAACAGTTCGCGTAGGGATGGTGGTTTGGCTGCAGTCTGGCTACACAATAACAAGGGAATCAGTCTTCGTGGCTGCAACCCTACTAGATTAAAATTTATTGAAACATAGTTACGCGTTGGGGAAAGTATGAGGGGATCTCTCAGGGCGGTGCACTAATCGGGCGGACAAGATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGGCAGAAAGAAATTTCGGATATTATCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAAt < 2:67823/292‑1 (MQ=255) aGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAAt > 1:139165/1‑298 (MQ=255) gCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACACTAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATATCTCAGAGCTGTGCACTAATCGGGCCGACAAAACA‑CGTCCAAGGCTGCGGCCAACAAGGGGGAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAACAATGAAATAAGAGAGCATTaagc > 2:246111/1‑296 (MQ=25) tAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAAAGTCAGAAAGAAATTTCGGATATTTTCCAACAACGCTGATTTCTATGGAGAAATATAAAGAATGAAATTAGAGAGAATTAACCaaa > 2:276125/1‑296 (MQ=255) aTTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGAcca > 1:29577/1‑298 (MQ=255) tAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGAGTTCTCTGGAGAAATATAATGAATGAGATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTc < 1:272193/298‑1 (MQ=255) aaGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTCTGtt < 1:336597/298‑1 (MQ=255) aGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTCTGttt > 2:157533/1‑298 (MQ=255) aGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTCTGTTTTTTaa < 1:227872/298‑1 (MQ=255) aCTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTCTGTTTTTTAAtt > 1:260876/1‑298 (MQ=255) tGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTCTGTTTTTTAATTCAGGAGGCg < 1:214287/298‑1 (MQ=255) cTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTCTGTTTTTTAATTCAGGAGGCGTTc < 1:157533/298‑1 (MQ=255) aGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAAACAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGACTGGTTTTTAATTACGGAGGCGTTCTGCGGGAGAAtgc > 2:250078/1‑296 (MQ=255) tttATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCTGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTCTGTTTTTTAATTCAGGAGGCGTTCTGCGGGAGAATTGCCAACCGAt < 1:319702/298‑1 (MQ=255) gggAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTCTGTTTTTTAATTCAGGAGGCGTTCTGCGGGAGAATTGCCAACCGATGCCAGCCATTACACTGAAAAAAAGt < 1:146455/298‑1 (MQ=255) tctcAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTCTGTTTTTTAATTCAGGAGGCGTTCTGCGGGAGAATTGCCAACCGATGCCAGCCATTACACTGAAAAAAAGTGCATATTCAACCATTAACt > 1:59321/1‑298 (MQ=255) | CAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGAGCTGTGCACTAATCGGGCCGACAAAATC‑AGTCCAAGGCTGCGGCCAAAAAGGGGAAAAATTCAGGGGAAGCCAGACAAACGTCAGAAAGAAATTTCGGATATTTTCCAGCAACGCTGATTTCTCTGGAGAAATATAAAGAATGAAATTCGAGAGAATTAACCAGAAATAGACCGGCGAAAAGACCAGCCAGCAATGCAGTCTGTTTTTTAATTCAGGAGGCGTTCTGCGGGAGAATTGCCAACCGATGCCAGCCATTACACTGAAAAAAAGTGCATATTCAACCATTAACT > CP006584/3671900‑3672475 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |