| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP006584 | 1,749,406 | Δ777 bp | [LY180_08300]–[LY180_08310] | [LY180_08300], LY180_08305, [LY180_08310] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006584 | 1749406–1750173 | 1750182 | 10–777 | 23 [0] | [0] 23 | [LY180_08300]–[LY180_08310] | [LY180_08300],LY180_08305,[LY180_08310] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006584 | = 1749405 | 0 (0.000) | 23 (0.570) | 23/566 | 0.8 | 100% | coding (14/864 nt) | LY180_08300 | transcriptional regulator |
| ? | CP006584 | 1750183 = | 0 (0.000) | coding (370/384 nt) | LY180_08310 | gdgsA | |||||
ACCTGAATCACATCGCGCGCCCCGCGTGAGGCACCAAACAAGGCCTCTGCCATCGTCCATGCGCTGATATCATGCTGAATATAAACCGGAACGCCGGTATGCTGCTCCAGAGCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAGGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCC > CP006584/1749123‑1749685 | tccgtggtccaatcgcgcgccccGCGTGAGGCACTAACCAGAGCCTCTGCCATCGTCCATGCGGTGATAGCAGGCTGAATATAAACCGGACCGCCGGTATGCTGCTCCAGAGCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatctt < 2:396328‑M1/287‑16 (MQ=255) cgcgcgACCCGCGTGGTGGACCAAACAAGGCCTCTGCCATCGTCCATGCGCTGATATCATGCTGAATATAAACCGGGACGCCGGTATGCTGCTCCAGGGCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttc < 2:146417‑M1/298‑29 (MQ=255) cgcgTGAGTCACCCAACAAGGCCGCTGCCATCGGCCAGGGGCTGATATACTGCTGAATATAAACCGGAACGCCGGTATGCTGCTCCAGAGCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGACCGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactc < 2:151101‑M1/298‑38 (MQ=255) gAGGCACCAAACAAGGCCTCTGCCATCGTCCATGCGCTGATATCATGCTGAATATAAACCGGAACGCCGGTATGCTGCTCCAGAGCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATACAAAACGGATCGATATGGGAAATGATACCATCCAGCAatggcccggcatcttttaccgccaattcccggagcccttgcc > 2:46450‑M1/1‑256 (MQ=255) ggCACCAAACAAGGCCTCTGCCATCGTCCATGCGCTGATATCATGCTGAATATAAACCGGAACGCCGGTATGCTGCTCCAGAGCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccacc < 1:330075‑M1/298‑45 (MQ=255) cATCGTCCATGCGCTGATATCATGCTGAATATAAACCGGAACGCCGGTATGCTGCTCCAGAGCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGCTCGATCTGGGAAATGATACGATCCCGCAatggcgagtcatcttttaacgccagttcctgcgacccttcccccaccagtttccctcctaagcag > 2:345557‑M1/1‑233 (MQ=255) ggccagGCGGTTATATCATGCTGAATATAAACCGGAACGCCGGTATGCTGCTCCAGAGCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgca < 2:37238‑M1/296‑70 (MQ=255) tCATGCTGAATATAAACCGGAACGCCGGTATGCTGCTCCAGAGCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactattccaccaccagtttgctgctcagatcgcgcagagcaaggaaaaact > 1:44435‑M1/1‑214 (MQ=255) gCCGGTATGCTGCTCCAGAGCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgactaatgcgcagagaa > 1:81653‑M1/1‑191 (MQ=255) cGGTATGCTGCTCCAGAGCCTCGCCGAGCGCCATCTCTTTTACATCCTCGTAGAACGGCACGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgactaatgcgcagagaaag < 1:254580‑M1/298‑110 (MQ=255) ccgatcttccagagcCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgactaatgcgcagagaaagatag < 1:299242‑M1/291‑114 (MQ=255) gCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGCTGTACAATGCCCTTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGACGTACGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGAGCGAGATGGGAAATGATACGATCCAGCAatggcgagtagtcttttaccgccatttcctgcgccgctaccacccccagtttgctgctcagatcgcgccgagcaaggaaaatcccccctcgactattgcccaccgccagatactgccaggcctgag > 2:417324‑M1/1‑172 (MQ=255) aCATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgact < 1:226577‑M1/242‑95 (MQ=255) aCATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgact > 2:226577‑M1/1‑148 (MQ=255) cATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgactaatgcgcagagaaagatagtgccaggcttcagtttcaaccaccagccccaccgccgg > 1:26204‑M1/1‑147 (MQ=255) gTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgactaatgcgcagagaaagatagtgccaggcttcagtttcaaccaccagccccaccgccggacggcca < 1:46450‑M1/298‑159 (MQ=255) aTCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgactaatgcgcagagaaagatagtgccaggcttcagtttcaaccaccagccccaccgccggacggccacggttccccgcttctttgatttccagctcttgcacc > 1:159511‑M1/1‑104 (MQ=255) tCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgactaatgcgcagagaaagatagtgccaggcttcagtttcaaccaccagccccaccgccggacggccacggttccccgcttctttgatttccagctcttgcacca > 1:307061‑M1/1‑103 (MQ=255) ataatTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgccgagcaaggaaaatctccccgcgactaatgcgcagagaaagatagtgcaaggctccagtttccaccaccagccccacccccggacggccacggttccccgctccttctatttccacctcttgcacccggg > 2:253209‑M1/1‑100 (MQ=255) taatTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGACGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgactaatgcgcagagaaagatagtgccaggcttcagtttcaaccaccagccccaccgccggacggccacggttccccgcttctttgatttccagctcttgcaccaggtg > 1:191101‑M1/1‑99 (MQ=255) ttAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgactaatgcgcagagaaagatagtgccaggcttcagtttcaaccaccagccccaccgccggacggccacggttccccgcttctttgatttccagctcttgcaccaggtgtgcttcgagcatctcacggacaattttagt < 1:345557‑M1/298‑230 (MQ=255) tGGGAAATGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgactaatgcgcagagaaagatagtgccaggcttcagtttcaaccaccagccccaccgccggacggccacggttccccgcttctttgatttccagctcttgcaccaggtgtgcttcgagcatctcacggacaattttattgatactggcagtaaccagttgcgccagacgggaaaaaaccaagtgcg > 2:185087‑M1/1‑22 (MQ=255) aaaTGATACGATCCAGCAatggcgagtcatcttttaacgccagttcctgcgactcttccaccaccagtttgctgctcagatcgcgcagagcaaggaaaatctccccgcgactaatgcgcagagcaagatagtgccaggcttcagtttcaaccaccagccccaccgccggacgcccacgcttccccgcttctttgatttccagcccttgcaccaggtgtgcttcgcgcaccccccgaccaatttaaggcatactgcccgcagcccgttgcgcccgacgggaaacaacgccacgcgagac > 2:76037‑M1/1‑18 (MQ=255) | ACCTGAATCACATCGCGCGCCCCGCGTGAGGCACCAAACAAGGCCTCTGCCATCGTCCATGCGCTGATATCATGCTGAATATAAACCGGAACGCCGGTATGCTGCTCCAGAGCCTCGCCGAGCGGCATCTCTTTTACATCCTCGTAGAACGGCATGCGATGTACAATGCCATTTTCCGTATCAATAATTCCCGGCAGGGTTATGGCAATCGAAGTTAGACGCTCAAGTTTTTTCTGGTGGCGGATAAAAAACTGATCGATATGGGAAATGATACGATCCAGCAGGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCC > CP006584/1749123‑1749685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |