Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP006584	3,431,620	Δ68 bp	coding (288‑355/879 nt)	LY180_16320 →	protease

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP006584	3431620	3431687	68	54 [0]	[0] 54	LY180_16320	protease

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	= 3431619	0 (0.000)	54 (1.300)	49/586	0.0	100%	coding (287/879 nt)	LY180_16320	protease
	?	CP006584	3431688 =	0 (0.000)					coding (356/879 nt)	LY180_16320	protease

GCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGCCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGAAGTGGCAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCCTCTGAACTGGGCGAACTGAAACGCTATGTTGAGAACGGTGAGTTTCTGATTGAAGCCAGCGATCTCGGCGTGGTGAATATGTGCGCTGAACGCAAACTGCCGTTCGTCGCCGGGCACGCGCTGAACTGCTACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCGAAAGATGAGTGTGAAACCTGCTGCATTAAGTATCCGAACGGGCGCAACGTGCTGTCGCAGGAAAACCAACAAGTGTTTGTA  >  CP006584/3431398‑3431980                                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                     gcaatgcaatattccttagggccagtgctgtggtactggccaaaagagacgctggaagatttttatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaacccaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagccgattgtgctctccaccctggcgctggtgcaggcatcctctgaactggtcgaactgaaacgctatgttgcgaacggtgcgtttcggcttgaaaccagcgaACCAcgcg                                                                                                                                                                                                                                                                                               >  2:428159‑M2/291‑298 (MQ=255)   aatgaaatattccttagggccagtgctgtggtactggccaaaagagacgctggaagatttttatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGt                                                                                                                                                                                                                                                                                             <  1:210463‑M2/10‑1 (MQ=255)                 tagggccagtgctgtggtactggccaaaagagacgctggaagatttttatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAatat                                                                                                                                                                                                                                                                               <  1:359015‑M2/24‑1 (MQ=255)                       cagtgctgtggtactggccaaaagagacgctggaagatttttatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCa                                                                                                                                                                                                                                                                         <  1:292528‑M2/30‑1 (MQ=255)                           gcggtggtacgggccaaaggggaggctggaaggtttttatcagcaggccgcgaccagcagcgccgacgtgatttatcttggtgaaggggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcaggttgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACa                                                                                                                                                                                                                                                                     <  2:149801‑M2/34‑1 (MQ=255)                              gtggtactggccaagagagagggtggaagattttttgcatcaggcccgcaccagcagggccgaggggattaatcttggggaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAggg                                                                                                                                                                                                                                                                  <  2:401760‑M2/37‑1 (MQ=255)                                   actggccaaaagagacgctggaagatttttatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgcccgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCatga                                                                                                                                                                                                                                                             >  1:255719‑M2/257‑298 (MQ=255)                                    ctggccaaaagagacgctggaagatttttatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaactggcaagcagattgtgctctccacgctggtgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagcaagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCatgat                                                                                                                                                                                                                                                            >  1:301289‑M2/256‑298 (MQ=255)                                     tggccaaaagagacgctggaagatttttatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCatgatg                                                                                                                                                                                                                                                           >  1:404330‑M2/255‑298 (MQ=255)                                         caaaagagacgctggaagatttttatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCt                                                                                                                                                                                                                                                       >  1:237742‑M2/251‑298 (MQ=255)                                           aaagagacgctggaagatttttatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTgg                                                                                                                                                                                                                                                     >  1:266322‑M2/249‑298 (MQ=255)                                               ggaggggggaatattttttgcagcaggcggcaacgagcagagccgaggtgatttatgttggtgaagcggtatgcagcaagagccgggcaacgaaagttggcgaatggctggagatggcaaaatcgctcgccggaaggggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTa                                                                                                                                                                                                                                                 <  2:378586‑M2/54‑1 (MQ=255)                                               aggcgcgggaatatttttgtcagcaggccgacagcaggagcggcgacgtgatttagctgggtgaagcggtaggcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaagatcgcgcgccggaagtggcaagcagagtgtgctctccacgctggcgctggtgcaggcatcctctgaactgtgagaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTa                                                                                                                                                                                                                                                 <  2:188135‑M2/54‑1 (MQ=255)                                                     tggaagatttttatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCgg                                                                                                                                                                                                                                           <  1:172485‑M2/60‑1 (MQ=255)                                                             ttttatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggttcaggcatcctcggaactgggcgaactgaaccgctatgctgagaacggtgcgtttacgattgaagccagcgaACAACGCGGTGCCGCTGAAACTCTTGACCAACCGGGGCCAGATGCGCCGGTGTCTGCCGGGAGAGCtt                                                                                                                                                                                                                                   >  2:357120‑M2/231‑298 (MQ=255)                                                                tatcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTcc                                                                                                                                                                                                                                <  1:428159‑M2/71‑1 (MQ=255)                                                                 atcagcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTccc                                                                                                                                                                                                                               <  1:5247‑M2/72‑1 (MQ=255)                                                                     gcaggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGGGGAGCTTTCCCGCGa                                                                                                                                                                                                                           >  1:140611‑M2/223‑298 (MQ=255)                                                                       aggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGAGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGAct                                                                                                                                                                                                                         >  1:245945‑M2/221‑298 (MQ=255)                                                                        ggccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGActg                                                                                                                                                                                                                        <  1:62048‑M2/79‑1 (MQ=255)                                                                         gccgccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGActgg                                                                                                                                                                                                                       >  1:241754‑M2/219‑298 (MQ=255)                                                                            gccaccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGActggctg                                                                                                                                                                                                                    >  1:148465‑M2/216‑298 (MQ=255)                                                                                ccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGaaaa                                                                                                                                                                                                                                                                                  <  2:100474‑M2/21‑1 (MQ=255)                                                                                ccagcagcgccgacgtgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGaaaa                                                                                                                                                                                                                                                                                  >  1:100474‑M2/212‑232 (MQ=255)                                                                                  agcagcgccgacgggatttatctggggggagcggtatgcagcaagcgccggggaaccaaagttggggactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgcgggcgcgggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAAt                                                                                                                                                                                                              <  2:14705‑M2/89‑1 (MQ=255)                                                                                               ttgtttatctgggtggaggggtatggagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgcccgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGt                                                                                                                                                                                                 <  2:255719‑M2/102‑1 (MQ=255)                                                                                               tgatttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGt                                                                                                                                                                                                 <  1:387815‑M2/102‑1 (MQ=255)                                                                                               tgatgtatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGt                                                                                                                                                                                                 <  1:100775‑M2/102‑1 (MQ=255)                                                                                                 atttatcttggtgaagcggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGc                                                                                                                                                                                               <  1:348950‑M2/104‑1 (MQ=255)                                                                                                              gaggggtaagcaggaagggccgggcaaccaaaggtggctgctggctggagatggcaaaatcgcgcgcgggaagtggcaagcagatggggctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgacacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCa                                                                                                                                                                                  <  2:375609‑M2/117‑1 (MQ=255)                                                                                                                  ggtatgcagcaagcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtctctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCCCAACCAGGGCATGACGCGCCGGTGTATGCCGGTGGAGCTTTGCCGCGACCGGCTGGTGAATCTGCTTAATCGGTCAGACGTGCGGGGCCTtcc                                                                                                                                                                              >  2:363333‑M2/178‑297 (MQ=255)                                                                                                                            aagcgccgggcacccacattgggcgactggctggggatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggggctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGttt                                                                                                                                                                    <  2:266322‑M2/131‑1 (MQ=255)                                                                                                                             agggcggggcacccaaggtgggggagtggctggggatggcaaaagcgcgcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTg                                                                                                                                                                   <  2:304584‑M2/132‑1 (MQ=255)                                                                                                                             agcgccgggcaaccaaagttggcgactggctggagatggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTg                                                                                                                                                                   >  1:420119‑M2/167‑298 (MQ=255)                                                                                                                                                                atggcaaaatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggttaaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtaagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGTGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTg                                                                                                                                <  1:87951‑M2/167‑1 (MQ=255)                                                                                                                                                                       aatcgctcgccggaagtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACt                                                                                                                         >  1:162990‑M2/125‑298 (MQ=255)                                                                                                                                                                                     ccggtgaatcagattgtgctctccacgctggtgcgggtggaggcattctctgcactgggcggatttaatcttgatgttgagaacggtgagtttctgagtgaagccgccgaACAACGCGGTGACGCTGAACATATTGCTCAAACAGGGCATGATGCGCTGGTTTATGCTGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCGGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCttt                                                                                                           <  2:301289‑M2/188‑1 (MQ=255)                                                                                                                                                                                      gtggcaagcagattgtgctctccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGGGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCGCTTTGAGGTGGAACTCCGGAGCTACGGTCACTTACGGCCGgcctacgccgaccgcgtgctct                                                                                                          >  2:181244‑M2/110‑291 (MQ=255)                                                                                                                                                                                      ctgggaagcaggttgggctctcccacgtgggtggggtgaaggcatcccctgaacttggcgaacggaaacgctatgttgggaacggtgagtttctgatttaagccagcgaACAACGCGGTGACGGTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTa                                                                                                          <  2:148465‑M2/189‑1 (MQ=255)                                                                                                                                                                                                          tccacgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGc                                                                                      >  1:354812‑M2/90‑298 (MQ=255)                                                                                                                                                                                                            catgctggcgctggtgcaggcatccgctgaactgggcgaactgaaacgatatggtgagaacggtgagtttctgattgaagccagcgaACAACGCTGTGACGCTGAAAATATGGCTCAAACAGGGCATGATGCGCTGGGGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGccc                                                                                    <  2:404330‑M2/211‑1 (MQ=255)                                                                                                                                                                                                             acgctggcgctggtgcaggcatcctctgaactgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGTGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCg                                                                                   >  1:197737‑M2/87‑298 (MQ=255)                                                                                                                                                                                                                               gacttcgttgaactgggcgaactgaaacgctagggtgagaacggtgagtttctggttgaaggcagcgaACAACGCGGGGACGCTGAAAATATTGCTGAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCGAAAGATGAGTGTGAAAcc                                                                 <  2:237742‑M2/230‑1 (MQ=255)                                                                                                                                                                                                                                           ctgggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGCATCTGCTTAATCAGTGCGAAGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTTAGCTACGGCCATCTACCGCGGGCCTACTCCGCCCGCTGCTTTACCGCGCGTCTGGAAGACCGCCCGAAAGACGAGTGTGAAACCACCTGCCTTAAg                                                     >  2:112147‑M2/57‑298 (MQ=255)                                                                                                                                                                                                                                              ggggaagtgaaacgctatgtggagaacggtgaggtgctgattgaagccggcgaACAACGCGGTGACAGTGAAAAGAGTGCTCAAACCGGGGATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGGTGGTGAATCTGCTTAATCAGTGCGATGGGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCGAAAGATGAGTGTGAAACCTGCTGCATTAAGTAt                                                  <  2:58957‑M2/245‑1 (MQ=255)                                                                                                                                                                                                                                              ggcgaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGAAGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCGAAAGATGAGTGTGAAACCTGCTGCATTAAGTAt                                                  <  1:112147‑M2/245‑1 (MQ=255)                                                                                                                                                                                                                                                 gaactgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCGAAAGATGAGTGTGAAACCTGCTGCATTAAGTATCCg                                               <  1:285452‑M2/248‑1 (MQ=255)                                                                                                                                                                                                                                                    ctgaaacgctatgttgagaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGTGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCGAAAGATGAGTGTGAAACCTGCTGCATTAAGTATCCGAAc                                            <  2:197737‑M2/251‑1 (MQ=255)                                                                                                                                                                                                                                                                     gaacggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCGAAAGATGAGTGTGAAACCTGCTGCATTAAGTATCCGAACGGGCGCAACGTGCTGTc                           >  1:171327‑M2/31‑298 (MQ=255)                                                                                                                                                                                                                                                                         ggtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGCGCTTTCCCGCGACTGCCTCGTGAATCTGCTTAATCCGTGCGCTGAGCTGGGCATTCGCAACCAGTTCGAAGTGGAAGTCCTGAGCTACGGTCACCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCCCGTTCCACCGCCCGCCCGCAAGACGAGGGTGAAACCTCCTGCATTAAGCATCCGAACGGGCGCACCGTGTGGTcgcct                       >  2:210057‑M2/27‑296 (MQ=255)                                                                                                                                                                                                                                                                          gtgagtttctgattgaagccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGCCCGGCTGGTGAATCTGCTTAATCAGTGCGATGCGCTGGGCATTCGCAACCAGTTTGACGCGGAAGTCCTGAGCCACGGTCATCTACCGCTCGCCTACTCCGCCCGCTGCTTTACCTCGCCTCCGGACGCCCGCCCGATAGATGAGTTTGAAACCTGCTGCATTCACTATCCGCCCGGCTGCCACGTGCTATCgcatg                      >  2:346203‑M2/26‑296 (MQ=255)                                                                                                                                                                                                                                                                                          agccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCGACAGATGAGTGTGAAACCTGCTGCATTAAGTATCCGAACGGGCGCAACGTGCTGTCGCAGGAAAACCAACAAGTGtt      >  1:30830‑M2/10‑298 (MQ=255)                                                                                                                                                                                                                                                                                          agccagcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCGAAAGATGAGTGTGAAACCTGCTGCATTAAGTATCCGAACGGGCGCAACGTGCTGTCGCAGGAAAACCAACAAGTGtt      >  1:25373‑M2/10‑298 (MQ=255)                                                                                                                                                                                                                                                                                              agcgaACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCGAAAGATGAGTGTGAAACCTGCTGCATTAAGTATCCGAACGGGCGCAACGTGCTGTCGCAGGAAAACCAACAAGTGTTTGTa  >  1:178234‑M2/6‑298 (MQ=255)                                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                     GCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGCCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGAAGTGGCAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCCTCTGAACTGGGCGAACTGAAACGCTATGTTGAGAACGGTGAGTTTCTGATTGAAGCCAGCGATCTCGGCGTGGTGAATATGTGCGCTGAACGCAAACTGCCGTTCGTCGCCGGGCACGCGCTGAACTGCTACAACGCGGTGACGCTGAAAATATTGCTCAAACAGGGCATGATGCGCTGGTGTATGCCGGTGGAGCTTTCCCGCGACTGGCTGGTGAATCTGCTTAATCAGTGCGATGAGCTGGGCATTCGCAACCAGTTTGAAGTGGAAGTCCTGAGCTACGGTCATCTACCGCTGGCCTACTCCGCCCGCTGCTTTACCGCGCGTTCGGAAGACCGCCCGAAAGATGAGTGTGAAACCTGCTGCATTAAGTATCCGAACGGGCGCAACGTGCTGTCGCAGGAAAACCAACAAGTGTTTGTA  >  CP006584/3431398‑3431980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑